CK939835

Overview
NameCK939835
Unique NameCK939835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939835_ssr15 microsatellite CK939835_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2572 contig Csv1_Contig2572:12..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.101e-59
Identity = 117/134 (87.31%), Postives = 124/134 (92.54%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 467
            M FKR+VEIGRVALVNYG+DYGKLVVIVDV+DQN ALVDAPDM R QMN KRLSLTDI IDINRVP+KK LIEAMEKADVKNKWE SSWGRKLIVQKRRAALNDFDRFK+MLAKIK+ G+VRQELAKLKRE AA
Sbjct:    1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.680e-59
Identity = 116/134 (86.57%), Postives = 124/134 (92.54%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 467
            M FKRYVEIGRVALVNYG+D+GKLVVIVDV+DQN ALVDAPDM R QMNFKRLSLTDI IDINRVP+KK+LIEAMEKADVKNKWE SSWGRKLIVQKRRA LNDFDRFK+MLAKIKK G+VRQELAKLK+E  A
Sbjct:    1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.533e-54
Identity = 105/133 (78.95%), Postives = 118/133 (88.72%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENA 464
            MPFKR+VEIGRVAL+NYGKDYG+LVVIVDV+DQ  ALVDAPDM RS +NFKRLSLTD+KIDI RVP+KK LI+A+E ADVKNKW  SSWGRKLIV+K RAALNDFDRFK+MLAKIK+   VRQELAKLK+  A
Sbjct:    1 MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 3.062e-26
Identity = 60/132 (45.45%), Postives = 87/132 (65.91%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 455
            M F+RYVE+GRVA +++G   GKLV IVDV+DQN ALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    1 MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 8.908e-26
Identity = 59/132 (44.70%), Postives = 87/132 (65.91%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 455
            M F+R+VE+GRVA +++G   GKLV IVDV+DQN ALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    1 MVFRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.163e-25
Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 455
            M F+R+VEIGRVA   YG D GKLV IVDV+DQN ALVD P   + R  MNFK L LT++K       +   + +A EK ++  KWE S   +K+  +++R  L DF+RFKLM AK  +  L++ E  KL++
Sbjct:    1 MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEK---ADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLK 452
            M F R+VE GRVALV+YG+   KLVVIVD+LDQN  LVD+P   + R  +N KR++LT IK+D   + R   + E   K   A V   +  S WG+KL  +++RAAL+DF RFK+M+A++KK   +  ELAKLK
Sbjct:    1 MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVD--DIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 114.775 bits (286), Expect = 4.421e-25
Identity = 57/132 (43.18%), Postives = 86/132 (65.15%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 455
            M F+R+VE+GRVA V++G   GKLV IVDV+DQN ALVD P   + R  M FK + LTD  +       +K + +A +KAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 57/132 (43.18%), Postives = 87/132 (65.91%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 455
            M F+R+VE+GRVA V++G   GKLV IVDV+DQN ALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CK939835 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 57/132 (43.18%), Postives = 87/132 (65.91%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNGALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 455
            M F+R+VE+GRVA V++G   GKLV IVDV+DQN ALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
The following BLAST results are available for this feature:
BLAST of CK939835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL141_ARATH2.101e-5987.3160S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL142_ARATH4.680e-5986.5760S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL14_PEA4.533e-5478.95Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_MOUSE3.062e-2645.4560S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_RAT8.908e-2644.7060S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_LUMRU1.163e-2546.2160S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_GRIJA1.985e-2549.2560S ribosomal protein L14 OS=Griffithsia japonica ... [more]
RL14_HUMAN4.421e-2543.1860S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_PIG1.286e-2443.1860S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_BOVIN1.680e-2443.1860S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004745_A06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939835 ID=CK939835; Name=CK939835; organism=Citrus sinensis; type=EST; length=688bp
GGGGGCCTCTTGCCTCATTCATTCATCTCCTCGCTCCTCCGGCAGAGCCT
TGAATATCTTCGAAAATGCCGTTCAAGAGGTACGTGGAGATAGGAAGAGT
TGCTCTCGTTAATTACGGGAAGGACTATGGGAAGCTTGTGGTCATCGTCG
ATGTCCTTGATCAAAACGGGGCTCTTGTTGATGCCCCTGATATGGTGAGG
AGCCAAATGAACTTCAAGAGGCTTTCTCTCACGGATATTAAGATTGACAT
CAATCGAGTTCCCAGGAAGAAGTCTTTGATTGAAGCCATGGAGAAGGCTG
ATGTGAAGAACAAATGGGAAAACAGCTCCTGGGGCAGGAAGCTGATTGTC
CAGAAAAGGAGAGCGGCACTGAATGATTTTGATAGGTTCAAGCTCATGTT
GGCCAAGATCAAGAAGGGTGGACTTGTTCGACAGGAGCTTGCAAAACTCA
AGAGGGAGAATGCAGCATAGAATTTCTCTCGTGTTCCCCTTTCTGGTTTT
TAGTTCTTACAGCTTCAATTTGATTCTATTAATGTATTGATTAATATGAG
AAAACATCAGCTTGGCGTTTTTGGGTTAATTGTTATTTGGACAGAATTTT
TAGATATTTTCGTAATGTCCTTTCTGTTATAATCTGATCTCAAGCTTTGT
TGTTCGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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