CK939806

Overview
NameCK939806
Unique NameCK939806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13106 contig Csv1_Contig13106:77..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: Y2287_ARATH (GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32
Identity = 66/116 (56.90%), Postives = 84/116 (72.41%), Query Frame = 1
Query:  256 LLVPPETEVSIDDSSLSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            L +PP  E+   +      +L GSNIV+  +A  +Q+ + EFVKSS R  DCP D  PE A++GRSNVGKSSL+N LVR+K++ALTSK PGKTQ INHF +N SWY+VDLPG G+A
Sbjct:   67 LFIPPGVEI---EELTDDMVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCPKDDRPEIAILGRSNVGKSSLINCLVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA 179          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_BACV8 (Probable GTP-binding protein engB OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=engB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.651e-26
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYAA 606
            ++  AEFV S+ + E CP D LPE+A +GRSNVGKSSL+N L +R KLA+TS TPGKT  INHF IN  WYLVDLPG GYA+
Sbjct:    2 EILSAEFVVSNTKVEKCPQDNLPEYAFIGRSNVGKSSLINMLAKRPKLAMTSSTPGKTLLINHFLINKEWYLVDLPGYGYAS 83          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_BACFR (Probable GTP-binding protein engB OS=Bacteroides fragilis GN=engB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.541e-23
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            ++  AEFV S+   + CP+   PE+A +GRSNVGKSSL+N L  RK LA+TS TPGKT  INHF IN+SWYLVDLPG GYA
Sbjct:    2 EITNAEFVISNTDVKKCPAGTFPEYAFIGRSNVGKSSLINMLTGRKGLAMTSATPGKTMLINHFLINNSWYLVDLPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_BACFN (Probable GTP-binding protein engB OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=engB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.541e-23
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            ++  AEFV S+   + CP+   PE+A +GRSNVGKSSL+N L  RK LA+TS TPGKT  INHF IN+SWYLVDLPG GYA
Sbjct:    2 EITNAEFVISNTDVKKCPAGTFPEYAFIGRSNVGKSSLINMLTGRKGLAMTSATPGKTMLINHFLINNSWYLVDLPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_BACTN (Probable GTP-binding protein engB OS=Bacteroides thetaiotaomicron GN=engB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.012e-23
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            ++  AEFV S+   + CP+   PE+A +GRSNVGKSSL+N L  RK LA+TS TPGKT  INHF IN SWYLVDLPG GYA
Sbjct:    2 EITSAEFVISNTDVKKCPTGVFPEYAFIGRSNVGKSSLINMLTARKGLAMTSATPGKTMLINHFLINQSWYLVDLPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_GRAFK (Probable GTP-binding protein engB OS=Gramella forsetii (strain KT0803) GN=engB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.647e-23
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            ++  AEFV S+ + + CP+  LPE+A +GRSNVGKSSL+N L  RK LA TS  PGKTQ INHF IN++W+LVDLPG GYA
Sbjct:    2 KIKTAEFVISNSKVDHCPNSTLPEYAFIGRSNVGKSSLINMLTGRKSLAKTSAKPGKTQLINHFLINNNWHLVDLPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_PORGI (Probable GTP-binding protein engB OS=Porphyromonas gingivalis GN=engB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.304e-22
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            ++ +A FV S+     CP   LPE+A +GRSNVGKSSL+N L  +K LA+TS+ PGKTQ INHF I+DSWYLVDLPG GYA
Sbjct:    2 EIKKAAFVISNTDVRKCPDTRLPEYAFIGRSNVGKSSLINMLTGQKGLAMTSQKPGKTQLINHFIIDDSWYLVDLPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_PORG3 (Probable GTP-binding protein engB OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=engB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.304e-22
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            ++ +A FV S+     CP   LPE+A +GRSNVGKSSL+N L  +K LA+TS+ PGKTQ INHF I+DSWYLVDLPG GYA
Sbjct:    2 EIKKAAFVISNTDVRKCPDTRLPEYAFIGRSNVGKSSLINMLTGQKGLAMTSQKPGKTQLINHFIIDDSWYLVDLPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_PARD8 (Probable GTP-binding protein engB OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=engB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.704e-22
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYAAAPRE 618
            ++  AEFV S+     CP    PE+A +GRSNVGKSSL+N L  +K LA+TS+TPGKT  INHF IN+ WYLVDLPG G+A   +E
Sbjct:    2 EIKSAEFVISNTDVRKCPEGNKPEYAFIGRSNVGKSSLINMLTNKKGLAMTSQTPGKTLLINHFLINNEWYLVDLPGYGFAQRGKE 87          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_HELMI (Probable GTP-binding protein engB OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=engB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.225e-22
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYAAAPR 615
            ++ +AEFV S+V+ E  P D LPE ALVGRSNVGKSSL+N L  R+ LA TS TPGKTQ +N +RIN + Y+VDLPG GYA+  +
Sbjct:    2 KIKEAEFVISAVKGEQYPEDNLPEVALVGRSNVGKSSLINKLCNRRHLARTSSTPGKTQTLNFYRINQAAYIVDLPGYGYASVSK 86          
The following BLAST results are available for this feature:
BLAST of CK939806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y2287_ARATH1.390e-3256.90GTP-binding protein At2g22870 OS=Arabidopsis thali... [more]
ENGB_BACV89.651e-2664.63Probable GTP-binding protein engB OS=Bacteroides v... [more]
ENGB_BACFR1.541e-2362.96Probable GTP-binding protein engB OS=Bacteroides f... [more]
ENGB_BACFN1.541e-2362.96Probable GTP-binding protein engB OS=Bacteroides f... [more]
ENGB_BACTN2.012e-2362.96Probable GTP-binding protein engB OS=Bacteroides t... [more]
ENGB_GRAFK7.647e-2361.73Probable GTP-binding protein engB OS=Gramella fors... [more]
ENGB_PORGI1.304e-2261.73Probable GTP-binding protein engB OS=Porphyromonas... [more]
ENGB_PORG31.304e-2261.73Probable GTP-binding protein engB OS=Porphyromonas... [more]
ENGB_PARD81.704e-2256.98Probable GTP-binding protein engB OS=Parabacteroid... [more]
ENGB_HELMI2.225e-2260.00Probable GTP-binding protein engB OS=Heliobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004745_C12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939806 ID=CK939806; Name=CK939806; organism=Citrus sinensis; type=EST; length=622bp
GGGGATGGCCACTCAAAATCTCTTGTAATCGAAAACCGCACACACAGAAA
AATGCTTTTTTCTCAGCTTCCAAGACTCAACTTTTCAATATTCGTAAAGC
CACCCCTGTCTCTCCGCTCACACTTCACCCTCTTACCAAAACACAGGCTC
AACTTCTCAGCGCTCAAATCCACACTCTCCACAACCGAACCGATACCCAT
ATCCCACGCGGTAGAACCAGAACCAGAACCCCACGTGGCAATATCACTCG
AAAAGCTACTTGTCCCGCCGGAAACAGAGGTCTCAATCGATGATTCGTCG
TTGAGTACGAGAATATTGAAGGGTTCGAACATAGTGTTGAGTAAGTACGC
AAGGGATGCTCAAGTTGCACAAGCTGAGTTCGTGAAGAGTAGTGTTAGGA
CTGAGGATTGCCCCTCTGATGGGTTGCCTGAATTTGCGCTGGTGGGCAGG
TCTAATGTTGGCAAATCTTCGCTTCTTAATTCACTTGTTAGAAGGAAGAA
GCTTGCTCTCACATCTAAGACGCCTGGGAAAACACAATGCATCAATCATT
TTCGGATAAATGATAGTTGGTACTTGGTGGATTTGCCTGGANNNGGGTAT
GCAGCTGCTCCTCGGGAACTTC
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