CN188376

Overview
NameCN188376
Unique NameCN188376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188376 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.970e-25
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = -2 
Query:  230 WENXXXXXXXXXXXXXEEQLKRKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 472
            WEN             EEQL++KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct:  118 WENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198
[Close]
BLAST of CN188376 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.279e-24
Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = -2 
Query:  230 WENXXXXXXXXXXXXXEEQLKRKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 472
            WEN             EEQL++KKAEYAE+MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct:  132 WENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212
[Close]
BLAST of CN188376 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.846e-21
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = -2 
Query:  230 WENXXXXXXXXXXXXXEEQLKRKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 472
            WEN             EE+L++KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  PK   GCF
Sbjct:  110 WENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190
The following BLAST results are available for this feature:
BLAST of CN188376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU1.970e-2569.14Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH8.279e-2466.67Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH3.846e-2160.49Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188376 ID=CN188376; Name=CN188376; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTTTTTTTTGGATTAAGAAAGTCATATTTATTGTTTCACCATT
TAAAAAGACAGATAGTACTTCTATTCCACAACACTTCCATCTTATCATTT
GCTTTAGTTCCATTGAGATTTACACACAAAACAGCACACCAATGACACAA
GAAAGTATACCCCATAAAAGTTGGGAGTCATTATCATAAACACAAAAAAT
ATACCACTTGCAAAAACAATTTGATTTCAGAAGCAACCGAGGAGCTTCTT
TGGAGTGGTCCCAGTAGCCCGATATTTTGCAGCTATCTCCTCAGCCTTAA
GAACGTCTTCTCCCCGTCTAGCTTCAACCATTGCCCTTTTCTCTTCTGCT
TCCTTGTGAACTAGAGCTACCTTATTTTTCATTTTTTCAGCATACTCTGC
CTTCTTCCTCTTCAGTTGTTCCTCAATCTTTTTCAGTTTGGCTTCTAGAG
ATGCTTTCTTGCTATTTTCCCAT
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