CK939744

Overview
NameCK939744
Unique NameCK939744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939744_ssr234 microsatellite CK939744_ssr234:234..245. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10586 contig Csv1_Contig10586:11..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939744 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.022e-12
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1
Query:  442 FLGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 552
            + G GF SK  YLFG  SM IK+V GDSAGTVTAFY+
Sbjct:   61 YTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYL 97          

HSP 2 Score: 40.817 bits (94), Expect = 1.022e-12
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 3
Query:  675 FQKMNSNTEXVRDELDFEFXXSRTGQPYTVQTNIY 779
            F   + N+E   DE+DFEF  +RTGQPY +QTN++
Sbjct:   95 FYLSSQNSE--HDEIDFEFLGNRTGQPYILQTNVF 127          
BLAST of CK939744 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1
Query:  427 LKRKAFLGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 552
            LK     GCGFASK+QYLFGRVSMKIKL+PGDSAGTVTAFY+
Sbjct:   58 LKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYM 99          
BLAST of CK939744 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 4.900e-12
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1
Query:  448 GCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 552
            G GF ++  YLFG  SM IKLV GDSAGTVTAFY+
Sbjct:   63 GTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYL 97          

HSP 2 Score: 41.2022 bits (95), Expect = 4.900e-12
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 3
Query:  675 FQKMNSNTEXVRDELDFEFXXSRTGQPYTVQTNIYA 782
            F   + N+E   DE+DFEF  +RTGQPY +QTN+++
Sbjct:   95 FYLSSQNSE--HDEIDFEFLGNRTGQPYILQTNVFS 128          
BLAST of CK939744 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.057e-12
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1
Query:  448 GCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 552
            GCGFASKR+YLFGRVSMKIKL+PGDSAGTVTAFY+
Sbjct:   66 GCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYM 100          
The following BLAST results are available for this feature:
BLAST of CK939744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
XTH5_ARATH1.022e-1267.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH4.137e-1280.95Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT4.900e-1268.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH7.057e-1291.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004746_C06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939744 ID=CK939744; Name=CK939744; organism=Citrus sinensis; type=EST; length=785bp
GGGGATACTCAGCATACATAACCACAACATATAATTAAAGATCTCTTTCT
AATTAGTAACAGATAATATTTTATTGTACGGCTTGTTTTACAGCTATGGC
TATCCTAAGAAATGCAATAGCATTATTTGTGTTGCTTTACTGTCTTGTAT
CCTGCTCTTGCGTTTTAGGGCGACCGGCTACTTTTCTTGAGGATTTTAAA
GTCACATGGTCCGATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCAT
CCAGCTAGTTCTAGACCAAAATTCAGGTGGGGTTCCAATTATGTTTTATA
TCTCAAGTAAATTTTAACATGGGCTTTCTAGCAACTTTATTTCTTTTGTT
CATCGTGCACATGATTGATCAACGAATATAATTACTATGTTCCAATTATG
CATATGATTGATCATCGTGCTACATACTAAAAAGAAAAGCATTTTTAGGA
TGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGCATGAA
GATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATTTTATG
TGTGTTAGTTAACTGTGTATATTTAGCGTTTAATTTATTGTGCAATTCTC
TGTTTCAAAAGTTGAAATTTTGGCACATGAAAGATACTAACTTTTAATTA
TTTTATTTGGTTTCTTAATTAATTTTTCAAAAGATGAATTCCAACACCGA
ANATGTGAGAGACGAGCTTGATTTTGAGTTCCNNNGAAGCCGAACGGGTC
AGCCTTACACGGTCCAGACCAATATCTATGCAAAT
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