CK939725

Overview
NameCK939725
Unique NameCK939725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:223..1076. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK939725 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.051e-27
Identity = 64/121 (52.89%), Postives = 78/121 (64.46%), Query Frame = 2 
Query:   59 MLEKPWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 421
            +L+K WDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK939725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.051e-2752.89Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004746_D09 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939725 ID=CK939725; Name=CK939725; organism=Citrus sinensis; type=EST; length=854bp
GGGGACTGAAGAAGAGGTTAAAGATTTAGAAACTAGCAGCTAAATTGTAA
ATTTAAAGATGCTAGAGAAGCCTTGGGACGATGTTGTGGCAGGGCCTCAG
CCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGC
AGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGT
CTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCG
ACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCA
CCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACA
AGCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGG
GAGACTAGGAGCAAGCATCATCACTAGTGGATGATACGCTACAGCGATGT
AAATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTG
TAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTG
TTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAA
ATGCTGCTGACTAAAAGTAAATTAAAGACTGTGATGTTTTTATATCATAT
AATTTAATAATTGCATGTGATGTGAGGATTGCTAAGCTGTGGGCGGAGAT
GAAAGGTTGCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCATTTTG
TAAGAGCCAAGATCATCCCTTCGTGGACGGTCGTGATGAGCATATATGTT
TTATTATTAATAAATAAGTTGCTTCTCTGAAAAAAAAAAAAAAAAAAAAA
AAAA
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