CN188337

Overview
NameCN188337
Unique NameCN188337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-36
Identity = 78/151 (51.66%), Postives = 101/151 (66.89%), Query Frame = -2
Query:  299 SVSWAPAMAPGALVGLGLLDP---VQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 733
            +VSWAPA+ PG+L+          ++K AS GCDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V +WTC    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  155 AVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWTCDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.835e-36
Identity = 78/151 (51.66%), Postives = 101/151 (66.89%), Query Frame = -2
Query:  299 SVSWAPAMAPGALVGLGLLDP---VQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 733
            +VSWAPA+ PG+L+          ++K AS GCDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  155 AVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.835e-36
Identity = 78/151 (51.66%), Postives = 101/151 (66.89%), Query Frame = -2
Query:  299 SVSWAPAMAPGALVGLGLLDP---VQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 733
            +VSWAPA+ PG+L+          ++K AS GCDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  155 AVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 77/151 (50.99%), Postives = 100/151 (66.23%), Query Frame = -2
Query:  299 SVSWAPAMAPGALVGLGLLDP---VQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 733
            +VSWAPA+ PG+L+          +++ AS GCDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC       W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 72/150 (48.00%), Postives = 97/150 (64.67%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLG---LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            SVSW+PA  P +LV      +  P++++ +  CDN +K++K     W +D    L+ H DWVR VAWAPN+GLP S IAS SQD +V++WT  + G  W G+ L  F   VW VSWS+ GN+LAV+  +N VTLWKE VD EW+ +S VE
Sbjct:  153 SVSWSPAAIPTSLVNSANTIIPAPIKRIVTGSCDNLIKIFKNVEDKWILD--KQLEDHKDWVRDVAWAPNIGLPYSKIASCSQDRSVIVWTQDENG-VWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKEGVDSEWKLISHVE 299          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 72/172 (41.86%), Postives = 97/172 (56.40%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGL------------GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-------------KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVE 733
            +VSWAPA+ PG+L+              G    V++ AS GCDNTVK+W+      +     ALQ HSDWVR VA+APN+GLP+S +A+ASQD TV+IWT       W    L               F   VW VSWS++GN+LAV+  +  +TLWKE + G W+ VS ++
Sbjct:  192 AVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIWEFSQEANRFVEVEALQGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAGAGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWECVSEMD 363          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_MAGGR (Protein transport protein SEC13 OS=Magnaporthe grisea GN=SEC13 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 71/151 (47.02%), Postives = 92/151 (60.93%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPA--LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            SVSWAP+ APG+++        Q+   + G DNT+K+W       +  C     L  H+DWV  V W+P + L KS IASASQD TV IWT        W+ RVLK+F T VW VSWSL+GN+LAV+  +N VTLWKE + GEW  V+ +E
Sbjct:  146 SVSWAPSTAPGSIISTNATPAAQRRFVTGGSDNTLKIWSWDAASAQYRCEEGGVLSGHTDWVLDVDWSPTV-LQKSYIASASQDRTVRIWTSDSSNPGVWQSRVLKEFDTTVWRVSWSLSGNVLAVSSGDNKVTLWKENLKGEWACVNSLE 295          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_YARLI (Protein transport protein SEC13 OS=Yarrowia lipolytica GN=SEC13 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 71/152 (46.71%), Postives = 93/152 (61.18%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGL--GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            S SWAP    G+L+    G      ++ + GCDN VK+WK             L  H DWVR VAW+ ++ L KS IASASQD TV++WT  +EG Q W+ ++L+D   P  VW VSWSL+GN+LAV+  +N VTLWKE + GEW+   VVE
Sbjct:  149 SASWAPPAVSGSLIQPINGKASNNIRIVTGGCDNLVKIWKYDPSSKTYVIEETLSGHKDWVRDVAWSSSV-LSKSYIASASQDKTVIVWT--QEGNQPWKKKLLQDIPFPDVVWKVSWSLSGNVLAVSGGDNKVTLWKENLTGEWESAGVVE 297          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.140e-27
Identity = 68/152 (44.74%), Postives = 96/152 (63.16%), Query Frame = -2
Query:  296 SVSWAPAMAPGALV----GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            S+SWAPA +PG+LV    G+G     ++  + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV +WT  A    QW  +VL +F   +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  162 SISWAPAASPGSLVSSNPGIG---QQRRFVTGGSDNLLKIWDYNPETKTYNATQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRVWTADASNPGQWTSQVL-EFDNVLWRVSWSPSGNILAVSGGDNKVSLWKENLRGQWEKVKDIE 308          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.194e-26
Identity = 77/156 (49.36%), Postives = 99/156 (63.46%), Query Frame = -2
Query:  296 SVSWAPAMAPGALV----GLGLLDPVQKLASCGCDNTVKVWKM---YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT--CAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            SVSWAPA  PG++V    G G     ++  + G DN +K+W      NG +K++  P L  H+DWVR VAW+P + L KS IASASQD TV IWT   A  GE W+ +VL +F   VW VSWSL+GN+LA +  NN VTLWKE + GEW+ V  +E
Sbjct:  154 SVSWAPATTPGSIVSSNPGPGSTGN-RRFVTGGSDNLLKIWTFDPATNG-YKLEREP-LAGHTDWVRDVAWSPTV-LQKSYIASASQDKTVRIWTSDAANPGE-WKCKVL-NFDAAVWRVSWSLSGNVLAASSDNNKVTLWKENLKGEWENVKTIE 303          
The following BLAST results are available for this feature:
BLAST of CN188337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SEC13_BOVIN3.702e-3651.66Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_RAT4.835e-3651.66Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE4.835e-3651.66Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN4.093e-3550.99Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_DICDI8.535e-3348.00Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA3.356e-2941.86Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_MAGGR1.666e-2847.02Protein transport protein SEC13 OS=Magnaporthe gri... [more]
SEC13_YARLI2.405e-2746.71Protein transport protein SEC13 OS=Yarrowia lipoly... [more]
SEC13_EMENI9.140e-2744.74Protein transport protein sec13 OS=Emericella nidu... [more]
SEC13_NEUCR1.194e-2649.36Protein transport protein sec-13 OS=Neurospora cra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188337 ID=CN188337; Name=CN188337; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTCGGATAAAGAGTTCATATGTAATTTAACAGAAA
TATTGGCAGTCACAAATACAGACATATGGATATGGAGATTAAGACACCAT
CATTTGTTTCTGAATCTGGCAAGAAAGAATAACAACTAACCAAATACAAA
TTAAGTATTCCAACAAAATCAATCCAACCAAAAAAAAAGGAAAAAAAAAA
ACTAAACCAGGTGTAAGAAAGGCTACTTCCAATAAGTCCAAAAAAGAACA
CAATGATTGTGAAAGGGTAAGTAGGAAGACACCTTATGTCTGTGGCTCAA
CTACACTCACTTGTTGCCACTCACCATCAACAGCTTCCTTCCACAATGTC
ACATTATTTGCATCAGCCACAGCCAACAAATTTCCAGTCAGTGACCACGA
AACACTCCAAACTGGTGTCTTAAAATCCTTCAAAACTCGACCCTCCCATT
GCTCCCCTTCCTTGGCACAGGTCCAAATAACAACTGTCCCATCCTGTGAT
GCACTTGCAATTGTGGATTTTGGAAGACCCAAGTTGGGAGCCCACGCCAC
GCTCCGCACCCAATCACTGTGCATCTGAAGGGCAGGGAAGCAATCCATCT
TCCAAATCCCATTATACATCTTCCACACCTTTACAGTATTATCACAACCA
CAAGAAGCCAATTTCTGAACAGGATCCAGTAAGCCCAATCCAACTAAAGC
ACCAGGAGCCATTGCCGGGGCCCATGAAACAGATGTT
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