CN188328

Overview
NameCN188328
Unique NameCN188328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.898e-69
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = -3
Query:  178 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELILAAADSAETAD 579
            SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRL REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGV PELILAAADSAETAD
Sbjct:  222 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.704e-63
Identity = 121/134 (90.30%), Postives = 127/134 (94.78%), Query Frame = -3
Query:  178 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELILAAADSAETAD 579
            SCMDPNVMEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VPGMKALDMN AEDAIVRL RE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+ PELILAAADSAE AD
Sbjct:  218 SCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.214e-62
Identity = 118/134 (88.06%), Postives = 125/134 (93.28%), Query Frame = -3
Query:  178 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELILAAADSAETAD 579
            SCMDPNVMEAK+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRL REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  215 SCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.107e-54
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = -3
Query:  196 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELILAAAD 579
            SCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRL REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  221 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.373e-54
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = -3
Query:  196 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVP---PELILAAAD 579
            SCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRL REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT     P    E ++A+ D
Sbjct:  218 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKD 348          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.536e-31
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = -3
Query:  274 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 579
            SCMDPN + A +V+S+ GHD P GA  VKRL S+G IE++ GM+ LDMN AEDAIV+  RE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  212 SCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = -3
Query:  274 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 579
            SCMDPN + A V++S+ GHDGPFGA   KRL S+G ++++ GM+ LDMNSAEDAIV+  REV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  215 SCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.484e-30
Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = -3
Query:  274 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 579
            SCMDPN + A +++S+ GHDGP GA  VKRL S+  IE++ GM+ LDMN AEDAIV+  RE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  208 SCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = -3
Query:  235 LLSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 585
            L SCMDPN + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+  REV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  212 LQSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.325e-28
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = -3
Query:  232 SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 579
            SCMDP+ + A +V S  GHDGPFGA  VKR+ S G+ E +  M+ LDM  AED I    RE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  220 SCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
The following BLAST results are available for this feature:
BLAST of CN188328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
THI4_CITSI7.898e-6998.51Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.704e-6390.30Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH3.214e-6288.06Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.107e-5483.59Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE9.373e-5481.68Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH6.536e-3164.71Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR1.902e-3062.75Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_FUSOX2.484e-3063.73Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI2_SCHPO3.587e-2957.26Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA2.325e-2853.45Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188328 ID=CN188328; Name=CN188328; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTTTGACCGGAAACAAACACTTTATTCACAAAACCTC
ACAACATCATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAAT
ACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTG
ATGATGCCTGTTATTATCAAATTAACCATCAGCAGTCTCAGCAGAATCAG
CTGCAGCTAAAATCAGCTCAGGGGGAACACCTCCCACATATGTACCGTCT
AATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTG
CCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCTAGGAGCACCAT
CAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCC
CTGGGCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTT
CATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTC
CAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTC
GCTTCCATTACATTGGGATCCATGCAAGAAAGCAATAAGCACAAGAAAAC
ATTATCAATTATGTGACAAAATCACAGAAATTTAGCGCCCTTAGGGGAAA
AGGAAAAAAAAAACAAAAACCAAAGCCTAAACAGTTTTCAGTTTAGTTTT
GATCAAAACCACTCAAACCGAAGTTCCCAAGCTTTTTATTGCTCCACCTA
ATATGAAAAAGCCC
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