CN188300

Overview
NameCN188300
Unique NameCN188300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.590e-20
Identity = 49/62 (79.03%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626
            KDGKYSQVVSNALDMKLRDDLERLKKIRNHRG RHYWGLRVRGQH            VSKKR
Sbjct:   91 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = -1
Query:  492 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQH 626
            KDGKYSQV+SNALD KLR+DLERLKKIR HRG RHYWGLRVRGQH
Sbjct:   91 KDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135          
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626
            KDGKYSQV++N+LD KLR+DLERLKKIR HRG RHYWGLRVRGQH            VSKK+
Sbjct:   91 KDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626
            KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH            VSKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626
            KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH            VSKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626
            KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH            VSKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626
            KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH            VSKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626
            KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH            VSKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626
            KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH            VSKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626
            KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH            VSKK+
Sbjct:   91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
The following BLAST results are available for this feature:
BLAST of CN188300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RS18_ARATH3.590e-2079.0340S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_AEQIR6.336e-1788.8940S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_BRABE1.412e-1667.7440S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_RAT5.364e-1666.1340S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG5.364e-1666.1340S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE5.364e-1666.1340S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_ICTPU5.364e-1666.1340S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_HUMAN5.364e-1666.1340S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
RS18_DANRE5.364e-1666.1340S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_CAPHI5.364e-1666.1340S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188300 ID=CN188300; Name=CN188300; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTCAAAAACTCAAATTCCCCTTTGCATATAACTAA
TTATATTGGAAACAGCTCGCAAAACATGATCCCACCCTGTCTACAAGCAC
ACATTGGTCATTCCCAAAGGGTTTGATGACTTATTAAAGCACCTTTTCAT
ATGTGGTCATCACGTAATTTATAAAGATGAGCATCCTCATTCAAGGTGCA
AAAATCAAGAAGCCGGCATGCAAAACATTCGCTTAAAAATATAATCTTTC
AAACATAAGATAAAAATATTACCATAGAGAAAATAATAGATAAAAGACAG
ACAGTTCAAATGCTTAAAACCCATCCAAAGAAAAGAAAATAAATCTAATA
TTGTCTGATGCAAATGTTCAGCAATAGCAAGTCCAAACTCTTCCTGAACA
TGTGTATAGATTGTTCAAAACATTGATAACGGACAGCTCAACGCTTCTTG
GAGACACCAACAGTCTTTCCACGACGACCGGTGGTCTTGGTGTGTTGTCC
ACGGACACGAAGACCCCAGTAGTGCCTGAAACCACGGTGGTTCCTGATCT
TCTTCAAACGCTCCAAATCATCTCTCAACTTCATGTCCAGTGCATTGGAT
ACAACCTGAGAATACTTTCCATCTTT
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