CN188300
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.590e-20 Identity = 49/62 (79.03%), Postives = 49/62 (79.03%), Query Frame = -1 Query: 441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRG RHYWGLRVRGQH VSKKR Sbjct: 91 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17 Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = -1 Query: 492 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQH 626 KDGKYSQV+SNALD KLR+DLERLKKIR HRG RHYWGLRVRGQH Sbjct: 91 KDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16 Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = -1 Query: 441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626 KDGKYSQV++N+LD KLR+DLERLKKIR HRG RHYWGLRVRGQH VSKK+ Sbjct: 91 KDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626 KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH VSKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626 KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH VSKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626 KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH VSKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626 KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH VSKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626 KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH VSKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626 KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH VSKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
BLAST of CN188300 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 441 KDGKYSQVVSNALDMKLRDDLERLKKIRNHRGFRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 626 KDGKYSQV++N LD KLR+DLERLKKIR HRG RH+WGLRVRGQH VSKK+ Sbjct: 91 KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152 The following BLAST results are available for this feature:
BLAST of CN188300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188300 ID=CN188300; Name=CN188300; organism=Citrus sinensis; type=EST; length=626bpback to top |