CN188298

Overview
NameCN188298
Unique NameCN188298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188298 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = -3
Query:  338 MVKAVAVLGQTHADETVEESDADGTVTFSQEGNRQTRVGGSFTDLEPDGAYALVIHQYGDIRDGWKSTGDRFKPAG-----------IAGVIAHFVADDEGTARFDLGTK-ADLSGENSVMSRGLVLH 685
            MVKAVAVL  +            GT+ FSQEG+  T V G+ + L+P G +   +H  GD  +G  STG  F PAG            AG + +    ++GTA F +  K   L+G NSV+ R +V+H
Sbjct:    1 MVKAVAVLSSSEG--------VSGTIFFSQEGDGPTTVTGNVSGLKP-GLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVH 119          
BLAST of CN188298 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = -3
Query:  338 MVKAVAVLGQTHADETVEESDADGTVTFSQEGNRQTRVGGSFTDLEPDGAYALVIHQYGDIRDGWKSTGDRFKPAG-----------IAGVIAHFVADDEGTARFDL-GTKADLSGENSVMSRGLVLH 685
            MVKAVAVLG +            GT+ F+QEG+  T V GS + L+P G +   +H  GD  +G  STG  F PAG            AG + +    ++GT   ++  ++  LSG NS++ R +V+H
Sbjct:    1 MVKAVAVLGSSEG--------VKGTIYFTQEGDGPTTVTGSISGLKP-GLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVH 119          
BLAST of CN188298 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 45/128 (35.16%), Postives = 64/128 (50.00%), Query Frame = -3
Query:  338 MVKAVAVLGQTHADETVEESDADGTVTFSQEGNRQTRVGGSFTDLEPDGAYALVIHQYGDIRDGWKSTGDRFKPAG-----------IAGVIAHFVADDEGTARFD-LGTKADLSGENSVMSRGLVLH 685
            MVKAV VL  +            GTV F+QEG+  T V G+ + L P G +   +H  GD  +G  STG  F PAG            AG + +    D+GTA F  + ++  L+G NS++ R +V+H
Sbjct:    1 MVKAVVVLSSSEG--------VSGTVQFTQEGSGPTTVTGNVSGLRP-GLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVH 119          
BLAST of CN188298 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = -3
Query:  338 MVKAVAVLGQTHADETVEESDADGTVTFSQEGNRQTRVGGSFTDLEPDGAYALVIHQYGDIRDGWKSTGDRFKPAG-----------IAGVIAHFVADDEGTARFDL-GTKADLSGENSVMSRGLVLH 685
            MVKAVAVL  ++        +  GT+ FSQEGN  T V G+   L+P G +   IH  GD  +G  STG  F P G            AG + +    D+GT  F +      L+G NS++ R +V+H
Sbjct:    1 MVKAVAVLSNSN--------EVSGTINFSQEGNGPTTVTGTLAGLKP-GLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVH 119          
The following BLAST results are available for this feature:
BLAST of CN188298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SODC_IPOBA1.878e-1136.72Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_ANACO2.453e-1135.16Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC1_MESCR5.465e-1135.16Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_PEA7.138e-1135.94Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188298 ID=CN188298; Name=CN188298; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTGACGAGTGTAAATTTTCCTTTATTTTATTTATG
GCCACATGCTACTTGGTACAACATATTATAGCCATGACTGGCTTTCATTT
ATTTTATTATAGCTACATTCTGCGTCGTACAGCATATTATTTATTTTTAT
TAAATATTCACAACACATTTAACATCATGCAAATGTATTTATAATGGTCT
GGAGAGAAGCCGCTTCAACGAGCGAGACCGATGACGGCCCAATCTACCCC
GGGACCTAAATACTTATCCCAATTTATGTCGGGACGAGGAATTGAACCCG
AGGAAACGTTCAGACAAGGATTTGAACTGTCAAAAACATGGAGTACAAGA
CCCCTACTCATAACGGAATTTTCTCCAGAAAGATCTGCCTTCGTCCCAAG
GTCAAAACGAGCCGTACCCTCATCATCAGCAACGAAATGTGCTATAACAC
CGGCAATTCCAGCAGGTTTAAAACGGTCTCCAGTTGATTTCCAACCGTCC
CTTATGTCTCCGTACTGGTGAATAACGAGTGCATAAGCACCATCAGGCTC
TAGATCGGTGAAGCTCCCTCCCACGCGTGTTTGACGATTTCCTTCCTGGG
AAAAGGTTACAGTTCCATCGGCATCCGATTCCTCAACAGTTTCATCGGCA
TGCGTCTGACCAAGAACTGCAACTGCTTTCACCATTTTGTTCACGATTTT
GCTGTATGATCTCCAAAAGAGAAAGGAAAATGAAGAGGGCTTAT
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