CN188296

Overview
NameCN188296
Unique NameCN188296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2652 contig Csv1_Contig2652:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.119e-44
Identity = 87/170 (51.18%), Postives = 120/170 (70.59%), Query Frame = -1
Query:  178 TKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 684
            T+EV+  DGW HTGDIG W P+G+LKI+DRKKNIFKL+QGEY+A E +EN+Y+    +  V+V+G S  SFL+ +V P+ D+L  +AA+ GV G F+ LC+N   KE IL +L ++ KE  LK FE +K++ + P PF IE  LLTPT K KR +L K +Q  I ++Y+S
Sbjct:  511 TQEVLDKDGWLHTGDIGRWLPNGTLKIVDRKKNIFKLAQGEYIAPEKIENVYSRSRPVLQVFVHGESLRSFLIGVVVPDPDSLPSFAAKIGVKGSFEELCKNQCVKEAILEDLQKIGKEGGLKSFEQVKSIFVHPEPFTIENGLLTPTLKAKRVELAKFFQTQIKSLYES 680          
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.493e-44
Identity = 88/170 (51.76%), Postives = 120/170 (70.59%), Query Frame = -1
Query:  178 TKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 684
            T+EV+  DGW HTGDIG W P+G+LKIIDRKKNIFKL+QGEY+A E +EN+Y+    I  V+V+G S  SFL+ +V P+ ++L  +AA+ GV G F+ LC+N   K+ IL +L +V KE  LK FE +K++ + P PF IE  LLTPT K KR +L K +Q  I ++Y+S
Sbjct:  511 TQEVLDKDGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVYSRSRPILQVFVHGESLRSFLIGVVVPDPESLPSFAAKIGVKGSFEELCQNQCVKKAILEDLQKVGKEGGLKSFEQVKSIFVHPEPFSIENGLLTPTLKAKRVELAKFFQTQIKSLYES 680          
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: ACSL5_HUMAN (Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.252e-44
Identity = 85/162 (52.47%), Postives = 113/162 (69.75%), Query Frame = -1
Query:  181 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYK 666
            DGW HTGDIG W P+G+LKIIDRKKNIFKL+QGEY+A E +ENIY     +  ++V+G S  S LV +V P+ D L  +AA+ GV G F+ LC+N   +E IL +L ++ KE  LK FE +KA+ L P PF IE  LLTPT K KR +L K+++  ID++Y+
Sbjct:  518 DGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQIFVHGESLRSSLVGVVVPDTDVLPSFAAKLGVKGSFEELCQNQVVREAILEDLQKIGKESGLKTFEQVKAIFLHPEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLYE 679          
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.140e-43
Identity = 78/163 (47.85%), Postives = 112/163 (68.71%), Query Frame = -1
Query:  178 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 666
            DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEY+A E +ENIY     +  V+V+G S ++FL+AIV P+ ++L  WA + G  G F+ LC N   K+ IL ++ R+ K+  LK FE ++ + L P  F ++  LLTPT K KRP+L  +++  ID +Y +
Sbjct:  533 DGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKRGFEGSFEELCRNKDVKKAILEDMVRIGKDSGLKSFEQVRGIALHPELFSVDNGLLTPTMKAKRPELRNYFRSQIDELYST 695          
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.787e-42
Identity = 79/161 (49.07%), Postives = 112/161 (69.57%), Query Frame = -1
Query:  184 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 666
            DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEY+A E +ENIY    A+  V+V+G S ++FL+A+V P+ ++L  WA + G+ G F+ LC N    + IL +L ++ KE  LK FE +K + + P  F I+  LLTPT K KRP+L  +++  ID +Y
Sbjct:  534 DGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQKRGLQGSFEELCRNKDINKAILDDLLKLGKEAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELY 694          
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.333e-42
Identity = 80/163 (49.08%), Postives = 112/163 (68.71%), Query Frame = -1
Query:  178 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 666
            DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEY+A E +ENIY     +  V+V+G S ++FL+AIV P+ + L  WA + G  G F+ LC N   K+ IL ++ R+ K+  LK FE +K + L P  F I+  LLTPT K KRP+L  +++  ID++Y +
Sbjct:  533 DGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGFEGSFEELCRNKDVKKAILEDMVRLGKDSGLKPFEQVKGITLHPELFSIDNGLLTPTMKAKRPELRNYFRSQIDDLYST 695          
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 169.088 bits (427), Expect = 1.975e-41
Identity = 79/168 (47.02%), Postives = 114/168 (67.86%), Query Frame = -1
Query:  184 TKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 684
            TKE +  DGW HTGDIG+W P G+LKIIDRKK+IFKL+QGEYVA E +ENIY     +  ++V+G+S ++FLV IV P+ + +  WA + G+ G +  LC N   K+ IL ++ R+ KE  L  FE +KA+H+    F ++  LLTPT K KRP+L ++++  I+ +Y
Sbjct:  526 TKEALDSDGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHGDSLKAFLVGIVVPDPEVMPSWAQKRGIEGTYADLCTNKDLKKAILEDMVRLGKESGLHSFEQVKAIHIHSDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693          
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.580e-41
Identity = 78/163 (47.85%), Postives = 110/163 (67.48%), Query Frame = -1
Query:  178 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMYKS 666
            DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEY+A E +ENIY    A+  V+V+G S ++FL+AIV P+ + L  WA + G  G F+ LC N    + IL ++ ++ K   LK FE +K + + P  F I+  LLTPT K KRP+L  +++  ID +Y +
Sbjct:  534 DGWLHTGDIGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAIVVPDVEILPSWAQKRGFQGSFEELCRNKDINKAILEDMVKLGKNAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELYST 696          
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.672e-40
Identity = 76/168 (45.24%), Postives = 118/168 (70.24%), Query Frame = -1
Query:  184 TKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 684
            TKE +  DGW HTGDIG+W P+G+LKIIDRKK+IFKL+QGEYVA E +ENIY     +  ++V+G+S ++FLV IV P+ + +  WA + G+ G+++ LC++ + K+ IL ++  + KE  L  FE +KA+++    F ++  LLTPT K KRP+L ++++  I+ +Y
Sbjct:  526 TKEALDSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHGDSLKAFLVGIVVPDPEVMPCWAQKKGIEGNYQELCKSKELKKAILDDMVMLGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693          
BLAST of CN188296 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.865e-40
Identity = 75/167 (44.91%), Postives = 110/167 (65.87%), Query Frame = -1
Query:  184 TKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQDVIDNMY 684
            T+E   DGWFHTGDIG W  DGSL I+DRKKNIFKLSQGEYVAVE +E I      ++ V +YG+S +S ++AI++P+ ++   WA     + D K +C+N    + +L ++ +  K+  L GFE  KA+HL P  F  + +LLTP++K KR ++ K+++D I  +Y
Sbjct:  503 TREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDDIIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLY 669          
The following BLAST results are available for this feature:
BLAST of CN188296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ACSL5_MOUSE1.119e-4451.18Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]
ACSL5_RAT2.493e-4451.76Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
ACSL5_HUMAN4.252e-4452.47Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapien... [more]
ACSL1_CAVPO6.140e-4347.85Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL1_MOUSE1.787e-4249.07Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
ACSL1_HUMAN2.333e-4249.08Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL6_HUMAN1.975e-4147.02Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
ACSL1_RAT2.580e-4147.85Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
ACSL6_RAT1.672e-4045.24Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
FCSB_DICDI4.865e-4044.91Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188296 ID=CN188296; Name=CN188296; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTACGGGAACTATCATTTCAGCAGTACAATTAATTTGAACTT
ATCGACTGAATAAATATCGATATGTACAGTCTGACAAGAAGCACAAGGAC
TTGAATGAAAAAAGAAACTTTTTCACACAGAAGCATACTCCAAAAATTAT
TTTCTTTCAAGAACTAGGCCTGTTTGCACTCTTGTACATGTTGTCGATTA
CATCCTGATAATGTTTGAGCAATTGGGGCCTTTTCTTCTTATACGTTGGA
GTAAGAAGATCACGTTCAATGTCGAATGGGACAGGTTCAAGATGAACAGC
TTTAATGAATTCAAAACCTTTCAACTTTTTCTCTTTAGCAACTCTTGAGA
GCTCTCCGAGTATGAATTCTTTTGCCTTGGGATTTTCACAGAGGGACTTG
AAGTCTCCATTTACACCATTTTCAGCTGCCCATCTTTCAAGTGCGTCCTT
GTTGGGGTTGACAATGGCAACAAGGAAGGACTCAAAGCTGTTCCCATACA
CCCATACCGAATCAATAGCAGATACAAGAGCATAAATATTCTCCAAGTTT
TCAACAGCAACATATTCTCCCTGAGAAAGCTTGAAAATGTTCTTCTTACG
GTCAATAATTTTCAAGCTTCCATCAGGTTGCCACTCACCAATATCACCTG
TATGGAACCACCCATCAACCATGACTTCTTTCGT
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