CN188287

Overview
NameCN188287
Unique NameCN188287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188287_ssr106 microsatellite CN188287_ssr106:106..117. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188287 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.916e-24
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 2 
Query:  206 FAEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFA 400
            F+EFS ADL+AATNNFSSD IVSESGEKAPN+VYKGRLQ    NRRWIAVKKFTK AWP+PKQFA
Sbjct:   58 FSEFSFADLKAATNNFSSDNIVSESGEKAPNLVYKGRLQ----NRRWIAVKKFTKMAWPEPKQFA 118
[Close]
BLAST of CN188287 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.535e-13
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:  206 FAEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQF 397
            F EFS+  +R AT+ F+++ IVSE GE+APNVVYKG+L    +N+R IAVK+F + +WPD +QF
Sbjct:   41 FREFSIETIRNATSGFAAENIVSEHGERAPNVVYKGKL----ENQRRIAVKRFNRKSWPDSRQF 100
The following BLAST results are available for this feature:
BLAST of CN188287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4523_ARATH9.916e-2483.08Probable serine/threonine-protein kinase At4g35230... [more]
Y5126_ARATH3.535e-1354.69Probable serine/threonine-protein kinase At5g41260... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005M16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188287 ID=CN188287; Name=CN188287; organism=Citrus sinensis; type=EST; length=401bp
TGGGGGGTTTGGTTGGTTCATTTCTTCTGAGTCCCTCGGCCGAGTTATGG
GCTGTTGCGAATCAACCTTCTTAAAAGGACACCTCTCGGTTGATACCAAA
AATCGCCACCACCACCAACAGAATCACCGCAATCATCCGACTCAGCCGTC
TAATGGTACTGAGGGCTCAGGCGGACTCGCTGCCGGCTCAGATGGCGCGC
CGGCTTTCGCCGAGTTCTCCTTAGCCGACCTCAGAGCCGCTACGAATAAC
TTCAGTTCTGATTTTATCGTATCCGAGAGCGGCGAAAAGGCTCCCAATGT
CGTCTATAAAGGCCGCCTTCAAGACGGAAATGATAACCGCCGTTGGATCG
CCGTTAAAAAATTCACCAAACATGCCTGGCCCGATCCCAAACAGTTTGCT
G
back to top