CN188282

Overview
NameCN188282
Unique NameCN188282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.552e-103
Identity = 184/220 (83.64%), Postives = 203/220 (92.27%), Query Frame = 2
Query:   71 MAIDSALPSPLGTPVCEKDAKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDSDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMR 730
            MA+DS L SPLG P CEKDAKALRFIEEMTRNAD+VQE +LAEIL+RN +TEYLRRFNL GATD DTFK+K+PV+TYEDLQPEIQRIA+GDRS ILS+HP+SEFLTSSGTSAGERKLMPTI EELDRRQLL+SLLMPVMNLYVPGLDKGKG+YFLFVK+ETKT  GL ARPVLTSYYKSE F++RPYDP+NVYTSP+EAILC DSFQSMY QMLCGL+ R
Sbjct:    1 MAVDSNLSSPLGPPACEKDAKALRFIEEMTRNADTVQENLLAEILARNADTEYLRRFNLCGATDRDTFKTKIPVITYEDLQPEIQRIADGDRSPILSAHPISEFLTSSGTSAGERKLMPTIKEELDRRQLLYSLLMPVMNLYVPGLDKGKGMYFLFVKSETKTPGGLPARPVLTSYYKSEHFRSRPYDPYNVYTSPNEAILCPDSFQSMYTQMLCGLLDR 220          
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 345.125 bits (884), Expect = 2.247e-94
Identity = 173/221 (78.28%), Postives = 193/221 (87.33%), Query Frame = 2
Query:   71 MAIDSALPSPL-GTPVCEKDAKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDSDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMR 730
            MA+DS L S +      EKD KAL+FIEEMTRN DSVQE+VL EIL+RN  TEYL+RF+LDG  D  TFKSKVPVVTYEDL+PEIQRI+NGD S ILSSHP++EFLTSSGTSAGERKLMPTI E+LDRRQLL+SLLMPVMNLYVPGLDKGKGLYFLFVK+E+KT+ GL ARPVLTSYYKS+ FK RPYDP+NVYTSP+EAILC DS QSMY QMLCGL+MR
Sbjct:    1 MAVDSPLQSRMVSATTSEKDVKALKFIEEMTRNPDSVQEKVLGEILTRNSNTEYLKRFDLDGVVDRKTFKSKVPVVTYEDLKPEIQRISNGDCSPILSSHPITEFLTSSGTSAGERKLMPTIEEDLDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSESKTSGGLPARPVLTSYYKSDHFKRRPYDPYNVYTSPNEAILCSDSSQSMYAQMLCGLLMR 221          
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.363e-91
Identity = 168/220 (76.36%), Postives = 189/220 (85.91%), Query Frame = 2
Query:   71 MAIDSALPSPLGTPVCEKDAKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDSDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMR 730
            M +DSAL SP+      KD KALRFIEEMTRN D VQ++V+ EILSRN +TEYL+RF L G TD  TFK+KVPVV Y+DL+PEIQRIANGDRS ILSS+P++EFLTSSGTSAGERKLMPTI E++DRRQLL+SLLMPVMNLYVPGLDKGK LYFLFVK E+KT  GL ARPVLTSYYKSE+FK RP DP+NVYTSP+EAILC DS QSMY QMLCGL+MR
Sbjct:    1 MTVDSALRSPMMHSPSTKDVKALRFIEEMTRNVDFVQKKVIREILSRNSDTEYLKRFGLKGFTDRKTFKTKVPVVIYDDLKPEIQRIANGDRSMILSSYPITEFLTSSGTSAGERKLMPTIDEDMDRRQLLYSLLMPVMNLYVPGLDKGKALYFLFVKTESKTPGGLPARPVLTSYYKSEQFKRRPNDPYNVYTSPNEAILCPDSSQSMYTQMLCGLLMR 220          
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.142e-88
Identity = 156/205 (76.10%), Postives = 180/205 (87.80%), Query Frame = 2
Query:  116 CEKDAKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDSDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMR 730
            CE+DA+ L FIEEMTR  D+VQERVLA IL+RN   EYLRR  ++G TD + FK++VPVVTYEDL+PEI+RIANGDRS I+SSHP++EFLTSSGTSAGERKLMPTI +ELDRRQ+L+SLLMPVMNLYVPGLDKGKGLYFLF+K+ETKT  GL ARPVLTSYYKS+ FK RP+DP+NVYTSP  AILC D+FQSMY QMLCGL+ R
Sbjct:   26 CERDAEKLEFIEEMTRGFDAVQERVLAAILARNNGAEYLRRHGMEGRTDREAFKARVPVVTYEDLRPEIERIANGDRSNIISSHPITEFLTSSGTSAGERKLMPTIEDELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFIKSETKTPGGLPARPVLTSYYKSDHFKHRPFDPYNVYTSPTAAILCTDAFQSMYAQMLCGLVAR 230          
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.537e-87
Identity = 161/216 (74.54%), Postives = 180/216 (83.33%), Query Frame = 2
Query:   83 SALPSPLGTPVCEKDAKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDSDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMR 730
            +AL +P    V E D + LRFI+EMT N D+VQERVL EIL RN  TEYL +  LDGATD   F++KVPVV+Y+DLQP IQRIANGDRS ILS+HPVSEFLTSSGTSAGERKLMPTI +ELDRRQLL+SLLMPVMNLYVPGLDKGKGLYFLFVK+ETKT  GL ARPVLTSYYKS+ FK RPYDP++ YTSP  AILC D+FQSMY QM+CGL  R
Sbjct:   12 TALRTPAAGAVKEGDVEKLRFIDEMTTNVDAVQERVLGEILGRNAGTEYLTKCGLDGATDRAAFRAKVPVVSYDDLQPYIQRIANGDRSPILSTHPVSEFLTSSGTSAGERKLMPTIMDELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETKTPGGLTARPVLTSYYKSDHFKNRPYDPYHNYTSPTAAILCADAFQSMYAQMVCGLCQR 227          
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 320.857 bits (821), Expect = 4.537e-87
Identity = 161/216 (74.54%), Postives = 180/216 (83.33%), Query Frame = 2
Query:   83 SALPSPLGTPVCEKDAKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDSDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMR 730
            +AL +P    V E D + LRFI+EMT N D+VQERVL EIL RN  TEYL +  LDGATD   F++KVPVV+Y+DLQP IQRIANGDRS ILS+HPVSEFLTSSGTSAGERKLMPTI +ELDRRQLL+SLLMPVMNLYVPGLDKGKGLYFLFVK+ETKT  GL ARPVLTSYYKS+ FK RPYDP++ YTSP  AILC D+FQSMY QM+CGL  R
Sbjct:   12 TALRTPAAGAVKEGDVEKLRFIDEMTTNVDAVQERVLGEILGRNAGTEYLTKCGLDGATDRAAFRAKVPVVSYDDLQPYIQRIANGDRSPILSTHPVSEFLTSSGTSAGERKLMPTIMDELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETKTPGGLTARPVLTSYYKSDHFKNRPYDPYHNYTSPTAAILCADAFQSMYAQMVCGLCQR 227          
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.046e-83
Identity = 159/221 (71.95%), Postives = 186/221 (84.16%), Query Frame = 2
Query:   71 MAIDSALPSPLGTPVC-EKDAKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDSDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMR 730
            MA+DS L S + +P   E + KAL+FIEE+TRN DSVQE+VL EILSRN  TEYL+RF+L+GA D  +FKSKVPVV YEDL+ +IQRI+NGDRS ILSSHP++EFLTSSGTSAGERKLMPTI E+++RRQLL +LLMPVMNLYVPGLDKGKGLYFLFVK+E+ T+ GL ARP LTSYYKS+ F+T   D  +VYTSP EAILC DS QSMY QMLCGL+MR
Sbjct:    1 MAVDSLLQSGMASPTTSETEVKALKFIEEITRNPDSVQEKVLGEILSRNSNTEYLKRFDLNGAVDRKSFKSKVPVVIYEDLKTDIQRISNGDRSPILSSHPITEFLTSSGTSAGERKLMPTIEEDINRRQLLGNLLMPVMNLYVPGLDKGKGLYFLFVKSESTTSGGLPARPALTSYYKSDYFRTSDSD--SVYTSPKEAILCCDSSQSMYTQMLCGLLMR 219          
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.164e-80
Identity = 143/203 (70.44%), Postives = 169/203 (83.25%), Query Frame = 2
Query:  113 VCEKDAKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDSDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGL 721
            + EK+   L+FIE++T NAD VQ RVL EILSRN + EYL+R  L+G TD +TFK  +PVVTYED+QPEI RIANGD+S +L S+P+SEFLTSSGTS GERKLMPTI EELDRR LL+SLLMPVM+ +VPGLDKGKG+YFLF+K+E+KT  GL ARPVLTSYYKS  FK RPYDP+  YTSP++ ILC DS+QSMY QMLCGL
Sbjct:   17 LAEKNKNKLQFIEDVTTNADDVQRRVLEEILSRNADVEYLKRHGLEGRTDRETFKHIMPVVTYEDIQPEINRIANGDKSQVLCSNPISEFLTSSGTSGGERKLMPTIEEELDRRSLLYSLLMPVMDQFVPGLDKGKGMYFLFIKSESKTPGGLPARPVLTSYYKSSHFKNRPYDPYTNYTSPNQTILCSDSYQSMYSQMLCGL 219          
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.850e-78
Identity = 140/201 (69.65%), Postives = 169/201 (84.08%), Query Frame = 2
Query:  119 EKDAKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDSDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGL 721
            +K+ + L+ IEE+T NAD VQ +VL EIL+RN + EYLRR +L+G TD +TFK+ +PV+TYED++PEI RIANGD+S ILSS P+SEFLTSSGTS GERKLMPTI EELDRR LL+SLLMPVM+ +VPGL+ GKG+YFLF+K+E+KT  GL ARPVLTSYYKS  FK RPYDP+  YTSP+E ILC DS+QSMY QMLCGL
Sbjct:   19 QKNKQKLQLIEELTSNADQVQRQVLEEILTRNADVEYLRRHDLNGRTDRETFKNIMPVITYEDIEPEINRIANGDKSPILSSKPISEFLTSSGTSGGERKLMPTIEEELDRRSLLYSLLMPVMSQFVPGLENGKGMYFLFIKSESKTPGGLPARPVLTSYYKSSHFKERPYDPYTNYTSPNETILCSDSYQSMYSQMLCGL 219          
BLAST of CN188282 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.040e-70
Identity = 133/202 (65.84%), Postives = 158/202 (78.22%), Query Frame = 2
Query:  128 AKALRFIEEMTRNADSVQERVLAEILSRNGETEYLRRFNLDGATDS-DTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEKFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMR 730
            A+AL FIE +T NA  VQ RVL EIL++N   EYLRR+ + G+ D  D F+  VP+VTYE LQP+I RIANGD S I S  P+SEFLTSSGTS GERKLMPTI +E++RR LL+SLLMPVM+  V GLDKGK +Y LFVKAE++T  GL ARPVLTSYY+S +F  RP DP+  YTSPDEAILCVDS+QSMY Q+LCGL+ R
Sbjct:   21 AEALEFIEHVTANAGQVQRRVLGEILAQNAPAEYLRRYGIPGSPDVVDAFRRLVPLVTYEGLQPDILRIANGDTSPIFSGKPISEFLTSSGTSGGERKLMPTIADEMNRRSLLYSLLMPVMSQSVSGLDKGKAMYLLFVKAESRTPGGLAARPVLTSYYRSRQFLDRPRDPYTSYTSPDEAILCVDSYQSMYAQLLCGLVHR 222          
The following BLAST results are available for this feature:
BLAST of CN188282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GH31_ARATH1.552e-10383.64Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ARATH2.247e-9478.28Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]
GH33_ARATH1.363e-9176.36Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH32_ORYSJ3.142e-8876.10Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSJ4.537e-8774.54Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI4.537e-8774.54Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH34_ARATH1.046e-8371.95Indole-3-acetic acid-amido synthetase GH3.4 OS=Ara... [more]
GH36_ARATH9.164e-8070.44Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH35_ARATH3.850e-7869.65Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH31_ORYSJ5.040e-7065.84Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188282 ID=CN188282; Name=CN188282; organism=Citrus sinensis; type=EST; length=731bp
GAGGCTTGAGCCAGCTTTTAGTTAAAAACAATCAAATTTAATTTCTCAAC
TAATCTTTAATTTCTGAATCATGGCCATTGATTCAGCTCTCCCATCCCCA
CTTGGGACACCTGTTTGTGAGAAAGATGCAAAAGCGCTTCGTTTCATTGA
AGAAATGACAAGAAATGCTGACTCGGTTCAAGAGAGGGTTTTGGCTGAGA
TACTCAGCCGAAACGGTGAGACTGAGTACCTCCGCCGGTTCAACCTTGAT
GGCGCAACAGACAGTGACACTTTCAAGTCCAAAGTCCCTGTTGTTACTTA
TGAAGATCTCCAACCTGAAATCCAACGTATCGCTAATGGCGATCGCTCTG
CCATCCTGTCCTCTCACCCTGTCTCTGAGTTCCTCACCAGTTCTGGGACT
TCAGCTGGTGAAAGAAAACTGATGCCAACGATTCATGAAGAGCTGGACCG
TCGCCAGCTGTTGTTCAGCCTTCTCATGCCTGTCATGAACCTTTACGTGC
CTGGGCTGGACAAAGGGAAGGGCCTATACTTCTTGTTTGTGAAAGCAGAA
ACGAAGACTGCCAGTGGGCTATTGGCACGTCCGGTGCTCACAAGCTACTA
CAAGAGTGAGAAATTCAAGACCAGGCCATATGATCCTTTCAATGTCTACA
CTAGCCCCGACGAGGCCATTCTTTGCGTTGATTCTTTCCAGAGCATGTAT
ATTCAGATGCTCTGCGGCCTTATCATGCGCG
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