CN188274

Overview
NameCN188274
Unique NameCN188274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.258e-50
Identity = 108/189 (57.14%), Postives = 133/189 (70.37%), Query Frame = 1
Query:  193 MASPAVVPSQPRSSKTESYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            +  PA    +P+    ++Y D  +  DI                TSLGP+GMDKMI  A+GEV ITNDGATIL +M V+ PAAKMLVELS++QD  AGDGTT+VVV+AGALLK    LL  GIHPT ISD   K +  AVD+LT M+ P+EL+DR+SLVKSASTSLNSKVVSQ+S+ LAP+AV++VL V
Sbjct:    2 VVKPAARGMKPQG---QAYKDKSKPADIRQSNINAAKAVSDAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEMSTPIELTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKV 187          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.966e-48
Identity = 103/181 (56.91%), Postives = 127/181 (70.17%), Query Frame = 1
Query:  217 SQPRSSKTESYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            S    +K  +Y D  +   I                TSLGPKGMDKMI    G+V ITNDGATIL +M+VL P+AKMLVELSK+QD  AGDGTT+VVVIAGALL  C  LL  GIHPT+IS++  KA    V+VLTAM+ PV+L DR++L+ SA+TSL SKVVSQYS+LLAP++VD+V+ V
Sbjct:   11 SNTGKNKGGAYQDRDKPAQIRYSNISAAKAVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQLGDRETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRV 191          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 189.119 bits (479), Expect = 2.220e-47
Identity = 94/145 (64.83%), Postives = 120/145 (82.76%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ PVELSDR++L+ SA+TSLNSKVVSQYS+LL+P++V++V+ V
Sbjct:   50 TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV 194          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47
Identity = 98/179 (54.75%), Postives = 127/179 (70.95%), Query Frame = 1
Query:  223 PRSSKTESYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            P S    +Y D  +   I                TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ PV+LSDR++L+ SA+TSLNSKVVSQYS+LL+P++V++V+ V
Sbjct:   16 PGSRGKSAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV 194          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47
Identity = 94/145 (64.83%), Postives = 119/145 (82.07%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ P ELSDR++L+ SA+TSLNSKVVSQYS+LL+P++VD+V+ V
Sbjct:   53 TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKV 197          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 6.460e-47
Identity = 93/145 (64.14%), Postives = 119/145 (82.07%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ PVELSDR++L+ SA+TSLNSKV SQYS+LL+P++V++V+ V
Sbjct:   50 TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSATTSLNSKVASQYSSLLSPMSVNAVMKV 194          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 8.437e-47
Identity = 93/145 (64.14%), Postives = 120/145 (82.76%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ PV+LSDR++L+ SA+TSLNSKVVSQYS+LL+P++V++V+ V
Sbjct:   50 TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV 194          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.629e-45
Identity = 93/172 (54.07%), Postives = 124/172 (72.09%), Query Frame = 1
Query:  244 SYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            ++ D ++ +++                TSLGPKGMDKMI T  GEVI+TNDGATIL  + VL PAAKMLV+LS +QD  AGDGTT+VV++AG++L     LL  GIHPTVI+++  +AA   VD +   A+ +ELSDR+SL+++A+TSLNSK+VSQYS LLAP+AVD+VL V
Sbjct:   10 AFQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKV 181          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 90/145 (62.07%), Postives = 115/145 (79.31%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            TSLGPKGMDKMI T+ GE+II+NDG TIL +M +L P A+MLVE+S +QD+ AGDGTT+VV++ GALL     LL+ GIHPT+I+D+   AA  +VD+L  M   V LSDR+ LV++ASTSL+SK+VSQYS+ LAPLAVDSVL +
Sbjct:   37 TSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKI 181          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.140e-43
Identity = 97/185 (52.43%), Postives = 122/185 (65.95%), Query Frame = 1
Query:  205 AVVPSQPRSSKTESYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            A    Q  S +  ++ D  + E +                TSLGP+GMDKMI + +G+V ITNDGATILN+M V+ P AKMLVELSK+QD  AGDGTTTVVV+AGALL     LLS GIHPT IS++   AA  A  +L  M+ PV+LS+   L K A+TSLNSKVVSQ+S LLAP+AV++V  +
Sbjct:    9 AATARQSASGRERNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDALLNKMATTSLNSKVVSQHSWLLAPMAVNAVKKI 193          
The following BLAST results are available for this feature:
BLAST of CN188274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TCPD_AEDTR1.258e-5057.14T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPD_TAKRU9.966e-4856.91T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_HUMAN2.220e-4764.83T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_MOUSE2.900e-4754.75T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_BOVIN2.900e-4764.83T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_PONAB6.460e-4764.14T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_RAT8.437e-4764.14T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_SCHPO4.629e-4554.07T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_YEAST3.001e-4462.07T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPD_CAEEL1.140e-4352.43T-complex protein 1 subunit delta OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188274 ID=CN188274; Name=CN188274; organism=Citrus sinensis; type=EST; length=760bp
GAGGGTTCCCTCCAGAACCTCCCCTGAATCTCTGTTTCTAGGGTTTTCGT
AAATTTCATTTCCACTCTCACCCCGATCTTTCCTCTTTGTTTACACTTTC
TGCCACTCCAAAACTCTGATCCGAACAAAATTAGGGTTCTAGGGATCCAA
AAAAATTAGGGTTTTAGGGTTTCTCGATCATACAAAATACAAATGGCATC
ACCAGCAGTAGTACCCTCTCAACCTCGTTCTTCGAAAACGGAGTCCTACG
TGGACAACAAGCGAAAAGAAGACATCCGCCAGGCCAATATCGTGGCGGCG
CGAGCCGTCGCCGATGCCGTGCGTACCAGTCTTGGCCCCAAAGGCATGGA
CAAGATGATCTCCACAGCCAGCGGGGAGGTCATCATCACCAATGACGGCG
CTACCATCTTGAACAAAATGGAAGTCCTCCAGCCCGCCGCCAAGATGCTT
GTTGAACTCTCCAAGTCTCAGGACGCCGCCGCCGGAGATGGTACCACCAC
CGTCGTCGTCATCGCCGGCGCCTTGTTGAAACAGTGCCTCATCCTGTTGT
CCAGCGGAATCCATCCCACCGTTATCTCCGATACTCTACACAAGGCCGCG
ATCCATGCCGTCGATGTGCTCACTGCAATGGCCGTGCCGGTCGAGTTATC
CGACCGTGACAGCTTGGTTAAGTCCGCGAGCACATCGTTGAACAGTAAGG
TCGTGAGTCAGTACTCGACGTTACTGGCGCCGTTAGCTGTTGACAGCGTT
TTATCAGTCG
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