CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2) HSP 1 Score: 221.476 bits (563), Expect = 3.208e-57 Identity = 127/216 (58.80%), Postives = 154/216 (71.30%), Query Frame = 1 Query: 37 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL-----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 MA FSST P + + ++N K LL LPDSC R +A S S R + + +L V LS P+V R L ++ V+R AT DVK++ME+TI+ +RT+FNS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ Sbjct: 1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKLPLGAGVNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQ 210
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.630e-51 Identity = 106/174 (60.92%), Postives = 132/174 (75.86%), Query Frame = 1 Query: 157 CRASSVSVRQWSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 C + +V W S+ANY R+ K S K +VV+QL + R G RCAT + K RME+TI+ +R+NFNSVRT R++P MLD+IEVEYYG+PVSLKSIAQI+TPD+SSLLI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K Sbjct: 33 CNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQLQN-RAGTFRCATMEEVEAEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSK 205
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2) HSP 1 Score: 198.749 bits (504), Expect = 2.227e-50 Identity = 102/165 (61.82%), Postives = 128/165 (77.58%), Query Frame = 1 Query: 187 WSSAANYSRLV----KLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 W++AANY ++ K + K +V+ Q KR G ++CAT VK RME+TI+ V+ +FNS+RT RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSLK IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQ Sbjct: 1 WTAAANYVKIKVGTGKFARKTVVLSQ---KRTGTLKCATMEEIEAEKSLIEKSVKERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQ 162
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2) HSP 1 Score: 175.637 bits (444), Expect = 2.019e-43 Identity = 91/163 (55.83%), Postives = 123/163 (75.46%), Query Frame = 1 Query: 190 SSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 SS+ N+ L ++ ++P++++ + V+R AT + RME+ I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK Sbjct: 40 SSSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAK 200
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2) HSP 1 Score: 175.637 bits (444), Expect = 2.019e-43 Identity = 91/163 (55.83%), Postives = 123/163 (75.46%), Query Frame = 1 Query: 190 SSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 SS+ N+ L ++ ++P++++ + V+R AT + RME+ I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK Sbjct: 40 SSSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAK 200
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNJB (Ribosome-recycling factor OS=Synechococcus sp. GN=frr PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 6.509e-34 Identity = 66/112 (58.93%), Postives = 93/112 (83.04%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ M + + + +FN+VRTGR+N ++LD+I+VEYYG P LK++A + TPDSS+LLIQP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK Sbjct: 5 EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ANASP (Ribosome-recycling factor OS=Anabaena sp. (strain PCC 7120) GN=frr PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.473e-33 Identity = 64/112 (57.14%), Postives = 92/112 (82.14%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 + +++M+ T++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD++++LIQPYDKSSL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK Sbjct: 5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILIQPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THEEB (Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.510e-33 Identity = 63/112 (56.25%), Postives = 92/112 (82.14%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 DV+ RM+++++ + +FNS+RTGR+N A+LD++ V+YYG+ L+S+A ++TPD++++LIQPYD+S+L SIEKAI SDLG+TPNNDG +RL +P LT+ERRKEL K AK Sbjct: 5 DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILIQPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNP6 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33 Identity = 64/112 (57.14%), Postives = 93/112 (83.04%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 DV++ M+++++ +FN++RTGR+N ++LDKI V+YYGS LKS+A I+TPD+S+L IQP+D+SS+ +IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNE7 (Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC 7942) GN=frr PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33 Identity = 64/112 (57.14%), Postives = 93/112 (83.04%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 DV++ M+++++ +FN++RTGR+N ++LDKI V+YYGS LKS+A I+TPD+S+L IQP+D+SS+ +IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAK 116 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |