CK939526

Overview
NameCK939526
Unique NameCK939526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939526_ssr15 microsatellite CK939526_ssr15:15..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:115..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939526 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.446e-23
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQVAEAEGNCKCGPTCACVNCTCG 290
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD   AE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK939526 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.368e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  102 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQVAEAEGNCKCGPTCACVNCTCGS 293
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   + AE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK939526 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.093e-18
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQVAEAEGNCKCGPTCACVNCTC 287
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V  AE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK939526 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.422e-16
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQVAEAEGNCKCGPTCACVNCTC 287
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD   AE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK939526 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.422e-16
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQVAEAEGNCKCGPTCACVNCTCG 290
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D   AE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK939526 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQVAEAEGNCKCGPTCACVNCTCG 290
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V   E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK939526 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQVAEAEGNCKCGPTCACVNCTCG 290
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V   E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK939526 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.345e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQVAEAEGNCKCGPTCACVNCTCG 290
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK939526 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.109e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQVAEAEGNCKCGPTCACVNCTCG 290
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK939526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA5.446e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.368e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.093e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV8.422e-1656.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO8.422e-1657.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ3.200e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.200e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.345e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI5.109e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004749_E01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939526 ID=CK939526; Name=CK939526; organism=Citrus sinensis; type=EST; length=599bp
GGGGATATCATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCC
TCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCGGA
CACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGG
GAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGC
ACCGTTGTTGTCATGGACGTTCAGGTTGCTGAGGCTGAAGGTAACTGCAA
GTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAAT
AAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATAT
TGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAAAGAAAAATT
CTCTACTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGC
GTGTTGTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAAT
CATGTAATATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAATTT
TAATGTATTATTGTTAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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