CN188237

Overview
NameCN188237
Unique NameCN188237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9234 contig Csv1_Contig9234:20..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_ARATH (Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.811e-78
Identity = 142/215 (66.05%), Postives = 170/215 (79.07%), Query Frame = 2
Query:   74 MDAFSSYFESRNGEARW--ESLKNFHQISPVVQSHLKQVYLSLCCALVASATGVYLHLLWNIGGLLTVFAMIGSMVWLLATPSYEEKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLT 712
            MDAFSS+F+S+ G   W  +SLKNF QISP VQ+HLK+VYL+LCCALVASA G YLH+LWNIGG+LT    IG+M+WLL+ P YE +KR+SLL  +A+ +GAS+GPLI +AI +DPSILI+AFVGT +AF CFS AAM+ARRREY                  FASSIFGGS +IFKFELYFGLL+FVGY+VVDTQ+IIEKAH GD+DYVKHSLT
Sbjct:    1 MDAFSSFFDSQPGSRSWSYDSLKNFRQISPAVQNHLKRVYLTLCCALVASAFGAYLHVLWNIGGILTTIGCIGTMIWLLSCPPYEHQKRLSLLFVSAVLEGASVGPLIKVAIDVDPSILITAFVGTAIAFVCFSAAAMLARRREYLYLGGLLSSGLSMLMWLQFASSIFGGSASIFKFELYFGLLIFVGYMVVDTQEIIEKAHLGDMDYVKHSLT 215          
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_ORYSJ (Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN=BI1 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.554e-63
Identity = 120/216 (55.56%), Postives = 153/216 (70.83%), Query Frame = 2
Query:   74 MDAFSSYFESRNGEAR---WESLKNFHQISPVVQSHLKQVYLSLCCALVASATGVYLHLLWNIGGLLTVFAMIGSMVWLLATPSYEEKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLT 712
            MDAF S   +    A    ++SLKNF QISP VQSHLK VYL+LC AL ASA G YLH+  NIGG+LT+   +GS+ WL + P +EE+KR  +L+A AL +GAS+GPLI LA+  D SIL++AFVGT +AF CF+ AA+VA+RREY                  FA+SIFG ST  F FE+YFGLL+F+GY+V DTQ+IIE+AH GD+DY+KH+LT
Sbjct:    1 MDAFYSTSSAYGAAASGWGYDSLKNFRQISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNIGGMLTMLGCVGSIAWLFSVPVFEERKRFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRREYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALT 216          
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_BOVIN (Bax inhibitor 1 OS=Bos taurus GN=TMBIM6 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.562e-35
Identity = 80/198 (40.40%), Postives = 117/198 (59.09%), Query Frame = 2
Query:  122 WESLKNFHQISPVVQSHLKQVYLSLCCALVASATGVYLHLLWNI--GGLLTVFAMIGSMVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKH 703
            +++L  F  I+P  Q HLK+VY S    +  +A G Y+H++ +    GLL+    +G M+WL+ATP S+E E+KR+ LL   A   G  +GP +DL I I+PSIL +AF+GT + F CF+++A+ ARRR Y                     ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H
Sbjct:   10 FDALFKFSHITPSTQQHLKKVYASFALCMFVAAAGAYIHVVTHFIQAGLLSALGSLGLMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALDLCIAINPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSAMSLMLLSSL-GNLFFGSVWLFQANLYMGLVVMCGFVLFDTQLIIEKAENGDKDYIWH 206          
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_PAROL (Probable Bax inhibitor 1 OS=Paralichthys olivaceus GN=tmbim6 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 80/200 (40.00%), Postives = 115/200 (57.50%), Query Frame = 2
Query:  122 WESLKNFHQISPVVQSHLKQVYLSLCCALVASATGVYLHLLWNI--GGLLTVFAMIGSMVWLLATP--SYEEKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSL 709
            ++SL  F QIS   Q HLK VY SL   +  +A G Y+H++  +  GG+L+V   +G M WL  TP  S  EKKR+++L   A   G  + P +D  I I+PSI+++AF+GT + F CF+++A+ A+RR Y                    +  F GS  +FK  +Y GLL+  G+++ DTQ IIEKA  GD DYV HS+
Sbjct:   10 FDSLFKFSQISHSTQVHLKNVYSSLAVCMFVAAAGSYVHVVTRLFQGGMLSVLGSLGMMFWLAMTPHNSETEKKRLAILAGFAFLTGVGLCPTLDFVIAINPSIIVTAFLGTSVIFVCFTLSALYAKRRSYLFLGGTLMSGLSILFLMSMMNMFF-GSVMLFKAHMYLGLLIMCGFVLXDTQLIIEKAENGDKDYVWHSV 208          
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_PIG (Bax inhibitor 1 OS=Sus scrofa GN=TMBIM6 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.907e-34
Identity = 80/198 (40.40%), Postives = 116/198 (58.59%), Query Frame = 2
Query:  122 WESLKNFHQISPVVQSHLKQVYLSLCCALVASATGVYLHLLWNI--GGLLTVFAMIGSMVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKH 703
            +++L  F  I+P  Q HLK+VY S    +  +A G Y+H++      GLL+    +G M+WL+ATP S+E E+KR+ LL   A   G  +GP +DL I I+PSIL +AF+GT + F CF+++A+ ARRR Y                     ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H
Sbjct:   10 FDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGSLGLMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALDLCIAINPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSAMSLMVLSSL-GNLFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAENGDKDYIWH 206          
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_MOUSE (Bax inhibitor 1 OS=Mus musculus GN=Tmbim6 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.491e-34
Identity = 79/198 (39.90%), Postives = 116/198 (58.59%), Query Frame = 2
Query:  122 WESLKNFHQISPVVQSHLKQVYLSLCCALVASATGVYLHLLWNI--GGLLTVFAMIGSMVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKH 703
            +++L  F  I+P  Q HLK+VY S    +  +A G Y+H++ +    GLL+    +  M+WL+ATP S+E E+KR+ LL   A   G  +GP ++L I ++PSIL +AF+GT + F CFS++A+ ARRR Y                     ++F GS  +F+  LY GLLV  G+++ DTQ IIEKA  GD DY+ H
Sbjct:   10 FDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLSALGSLALMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAVNPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMLLSSL-GNLFFGSIWLFQANLYLGLLVMCGFVLFDTQLIIEKAEHGDKDYIWH 206          
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_RAT (Bax inhibitor 1 OS=Rattus norvegicus GN=Tmbim6 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 79/200 (39.50%), Postives = 115/200 (57.50%), Query Frame = 2
Query:  122 WESLKNFHQISPVVQSHLKQVYLSLCCALVASATGVYLHLLWNI--GGLLTVFAMIGSMVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSL 709
            +++L  F  I+P  Q HLK+VY S    +  +A G Y+H++      GLL+    +  M+ L+ATP S+E E+KR+ LL   A   G  +GP ++L I I+PSIL +AF+GT + F CFS++A+ ARRR Y                     ++F GS  +F+  LY GLLV  G+++ DTQ IIEKA  GD DY+ H +
Sbjct:   10 FDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGALALMICLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAINPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMFVSSL-GNLFFGSIWLFQANLYMGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCI 208          
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_HUMAN (Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 76/200 (38.00%), Postives = 116/200 (58.00%), Query Frame = 2
Query:  122 WESLKNFHQISPVVQSHLKQVYLSLCCALVASATGVYLHLLWNI--GGLLTVFAMIGSMVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSL 709
            +++L  F  I+P  Q HLK+VY S    +  +A G Y+H++ +    GLL+    +  M+WL+ATP S+E E+KR+ LL   A   G  +GP ++  I ++PSIL +AF+GT + F CF+++A+ ARRR Y                     ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H +
Sbjct:   10 FDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSL-GNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCI 208          
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_PONAB (Bax inhibitor 1 OS=Pongo abelii GN=TMBIM6 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.013e-33
Identity = 76/200 (38.00%), Postives = 116/200 (58.00%), Query Frame = 2
Query:  122 WESLKNFHQISPVVQSHLKQVYLSLCCALVASATGVYLHLLWNI--GGLLTVFAMIGSMVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSL 709
            +++L  F  I+P  Q HLK+VY S    +  +A G Y+H++ +    GLL+    +  M+WL+ATP S+E E+KR+ LL   A   G  +GP ++  I ++PSIL +AF+GT + F CF+++A+ ARRR Y                     ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H +
Sbjct:   10 FDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCITVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSL-GNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCI 208          
BLAST of CN188237 vs. ExPASy Swiss-Prot
Match: BI1_DROME (Probable Bax inhibitor 1 OS=Drosophila melanogaster GN=CG7188 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.518e-15
Identity = 55/190 (28.95%), Postives = 94/190 (49.47%), Query Frame = 2
Query:  155 PVVQSHLKQVYLSLCCALVASATGVYLHLLWNIGGLLTVFAMIGSMVWLLATPSYEEK-----KRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXXHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSL 709
            P V+ HL +VY+ L     A+A G  L +   +   L V A + ++V +L    Y++       R+ +L A     G ++GPL+     I+P+I++SA  GT + F   S++A++A + +Y                    + +F  S  +   +LY G+ V   +IV DTQ+I+EK   G+ D V+H+L
Sbjct:   25 PYVREHLSKVYMVLGSTAAATAMGAMLQMRDFLD--LGVLAAVATLVLVLGLHFYKDDGKNYYTRLGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLGGMLVSVINTMALLSLFNMVF-KSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDVVQHAL 211          
The following BLAST results are available for this feature:
BLAST of CN188237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BI1_ARATH2.811e-7866.05Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE... [more]
BI1_ORYSJ2.554e-6355.56Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN... [more]
BI1_BOVIN8.562e-3540.40Bax inhibitor 1 OS=Bos taurus GN=TMBIM6 PE=2 SV=1[more]
BI1_PAROL1.118e-3440.00Probable Bax inhibitor 1 OS=Paralichthys olivaceus... [more]
BI1_PIG1.907e-3440.40Bax inhibitor 1 OS=Sus scrofa GN=TMBIM6 PE=2 SV=1[more]
BI1_MOUSE2.491e-3439.90Bax inhibitor 1 OS=Mus musculus GN=Tmbim6 PE=2 SV=... [more]
BI1_RAT6.136e-3339.50Bax inhibitor 1 OS=Rattus norvegicus GN=Tmbim6 PE=... [more]
BI1_HUMAN6.136e-3338.00Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=... [more]
BI1_PONAB8.013e-3338.00Bax inhibitor 1 OS=Pongo abelii GN=TMBIM6 PE=2 SV=... [more]
BI1_DROME1.518e-1528.95Probable Bax inhibitor 1 OS=Drosophila melanogaste... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188237 ID=CN188237; Name=CN188237; organism=Citrus sinensis; type=EST; length=712bp
GAGGCTCCATCTGAATTTTCTCTTGCAATTTTCTCGAGGTTGCTTTTCAG
ACAAACAACGTCAATAATCAAGAATGGATGCTTTCTCTTCCTACTTCGAG
TCTCGTAACGGCGAAGCCCGCTGGGAGTCCTTGAAAAACTTTCACCAGAT
CTCTCCCGTCGTCCAGTCTCACCTTAAGCAGGTTTATCTGTCATTATGCT
GTGCACTGGTGGCATCAGCCACTGGAGTCTACCTCCATCTCCTCTGGAAC
ATTGGTGGCTTACTTACGGTTTTTGCAATGATTGGATCAATGGTTTGGCT
TCTCGCAACCCCTAGTTATGAAGAGAAAAAGAGGGTTTCTCTGCTCATGG
CTACCGCTCTCTTTAAAGGTGCATCAATTGGTCCTTTGATTGATCTCGCC
ATTCAAATTGACCCAAGCATTCTGATATCTGCATTTGTGGGAACTGGGCT
GGCTTTCGCTTGTTTTTCTGTAGCTGCCATGGTTGCAAGGCGGAGAGAGT
ATCTCTATCTTGGTGGCTTGCTTTCATCAGGCCTGTCCATGCTTCTTTGG
TTGCATTTTGCTTCCTCTATCTTTGGTGGTTCAACAGCTATCTTCAAGTT
TGAGTTATACTTTGGGCTGTTGGTGTTTGTTGGCTACATCGTGGTGGATA
CCCAGGATATAATTGAGAAAGCTCACTTTGGAGACTTGGATTATGTCAAG
CATTCCCTGACT
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