CK939504

Overview
NameCK939504
Unique NameCK939504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2192 contig Csv1_Contig2192:1..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK939504 vs. ExPASy Swiss-Prot
Match: Y1666_ARATH (Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.450e-31
Identity = 88/195 (45.13%), Postives = 105/195 (53.85%), Query Frame = 2 
Query:  290 QKRRWGSCWSLYWCFGSHKTSKRISHAVLLPE------PMVXXXXXXXXXXXXXXXXIVLPFIXXXXXXXXFLQSDPSSATQSPAELLCLNSLSVNAYSPGGPAS-MFAIGPYAHETQLVTPPVFSAFTTEPSTALCTPPPESVQLTTPSSPEVPFAQLLTSSLERARRNSGTNQKLSLSHYG--YQPYQLYPGS 847
            Q++RWG C  ++ CF S K  KRI  A  +PE                         I L  +        F  S   S TQSP    C  SL+ N  SPGGP+S M+A GPYAHETQLV+PPVFS FTTEPSTA  TPPPE  +LT PSSP+VP+A+ LTSS++   +NSG        HY      Y LYPGS
Sbjct:    7 QRKRWGGCLGVFSCFKSQKGGKRIVPASRIPEGGNVSASQPNGAHQAGVLNNQAAGGINLSLLAPPSSPASFTNSALPSTTQSPN---CYLSLAAN--SPGGPSSSMYATGPYAHETQLVSPPVFSTFTTEPSTAPFTPPPELARLTAPSSPDVPYARFLTSSMD--LKNSGK------GHYNDLQATYSLYPGS 188
The following BLAST results are available for this feature:
BLAST of CK939504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1666_ARATH3.450e-3145.13Uncharacterized protein At1g76660 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004749_G03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939504 ID=CK939504; Name=CK939504; organism=Citrus sinensis; type=EST; length=849bp
GGGGGTTTTGGNNNGTAATAATAAAACATATAAACTCACCGTTTCGTAAT
AATTCTTTTGCTCTTCGTTTTTTCAACCAAATCTTTGAAATACTTGAAAA
AGCGGAAAGCTTTCGTTTGGAGATCCAAACGGAAGCTGTAGATGTTATTA
CACAACTCGTTTGTGCCGTCGTTTCATGTTTTGAAAATTTGAAAACAAGA
TGAGTAGTGTTCACGACAGCGTCGAGACCGTTAACGCCGCTGCAACTGCC
ATAGTTTCAGCTGAGTCCCGCCTCCGGCCAGCCGCGATTCAGAAAAGAAG
ATGGGGAAGCTGTTGGAGCCTCTACTGGTGTTTTGGATCTCATAAAACTA
GCAAGCGGATTAGCCATGCTGTCCTTCTTCCTGAACCAATGGTAACAGGA
GCCGCAGCCCCAGCTGCAGAAACTCAAGCCCACTCAACAGCCATTGTACT
TCCCTTCATTGCTCCTCCCTCTTCTCCTGCATCGTTCCTCCAATCAGACC
CTTCATCTGCCACCCAATCACCTGCTGAATTGCTTTGCCTCAATTCCCTT
TCTGTCAACGCCTATTCTCCTGGTGGACCTGCATCCATGTTTGCCATAGG
CCCATATGCTCACGAAACACAGTTAGTTACACCACCTGTGTTTTCTGCCT
TCACCACTGAACCATCTACTGCCCTTTGCACCCCCCCTCCCGAATCTGTT
CAATTGACAACTCCTTCATCTCCGGAAGTGCCATTTGCTCAACTGTTGAC
ATCTTCACTGGAACGTGCTCGAAGAAACAGCGGGACTAATCAGAAGCTCT
CATTATCCCATTATGGATACCAGCCTTATCAGCTGTACCCAGGAAGCCC
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