CX043812

Overview
NameCX043812
Unique NameCX043812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043812 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.575e-46
Identity = 86/131 (65.65%), Postives = 108/131 (82.44%), Query Frame = -3
Query:  290 EIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 682
            +I++ HL+VGLKGQPP++DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  202 DIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332          
BLAST of CX043812 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.985e-46
Identity = 87/131 (66.41%), Postives = 107/131 (81.68%), Query Frame = -3
Query:  290 EIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 682
            +I++ HL+VGLKGQP IIDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  201 DIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331          
BLAST of CX043812 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.021e-45
Identity = 86/131 (65.65%), Postives = 107/131 (81.68%), Query Frame = -3
Query:  290 EIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 682
            +I++ HL+VGLKGQ P+IDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  202 DIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332          
BLAST of CX043812 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.741e-45
Identity = 85/131 (64.89%), Postives = 107/131 (81.68%), Query Frame = -3
Query:  290 EIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 682
            +I++ HL+VGLKGQP I+DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+A+ +
Sbjct:  202 DIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKARFN 332          
BLAST of CX043812 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.067e-45
Identity = 85/131 (64.89%), Postives = 106/131 (80.92%), Query Frame = -3
Query:  290 EIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 682
            +I++  L+VGLKG PP+IDGEL   VK ++  W IED KTV++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQ+ILKKFM +HPEMDFS+AK +
Sbjct:  211 DIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN 341          
BLAST of CX043812 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.359e-34
Identity = 74/136 (54.41%), Postives = 93/136 (68.38%), Query Frame = -3
Query:  293 IKKNHLKVGLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKI 679
            +KK+ +KV +KG+     IDG+    +KP +  W++E       K VSI L K NQMEWW  ++   P+ID  K+ PENS LSDLD ETR+ VEKMM+DQRQK MG P+SDE +K +ILKKF  EHPEMDFS AKI
Sbjct:   62 LKKDSIKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAKI 197          
BLAST of CX043812 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.699e-30
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = -3
Query:  290 EIKKNHLKV-GLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 682
            +I  +HL V  L     IIDG+L+  VK  DC W++E  K + I L K    EWW C+I+G  EID  +++P+NS LSD D ETR+ VEKM+++Q +K+ GLP++DE +KQ I + F  EHP+MDFS AK +
Sbjct:   40 KIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDEEEKQRIFETFKNEHPDMDFSNAKFN 171          
BLAST of CX043812 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = -3
Query:  296 LKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAK 664
            +++ +  +  ++ G L   +  D+  W++E+Q+ + I L K N+MEWW C+IKG P ID   +EPENSKLSDLD ETR+TVEKMM +Q QK      +DE +++++L+ FM +HPE+DFS  +
Sbjct:   46 IQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQK-----RTDEQKRKDVLQNFMKQHPELDFSNVR 163          
The following BLAST results are available for this feature:
BLAST of CX043812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NUDC_MOUSE1.575e-4665.65Nuclear migration protein nudC OS=Mus musculus GN=... [more]
NUDC_HUMAN5.985e-4666.41Nuclear migration protein nudC OS=Homo sapiens GN=... [more]
NUDC_RAT1.021e-4565.65Nuclear migration protein nudC OS=Rattus norvegicu... [more]
NUDC_BOVIN1.741e-4564.89Nuclear migration protein nudC OS=Bos taurus GN=NU... [more]
NUDC_CHICK5.067e-4564.89Nuclear migration protein nudC OS=Gallus gallus GN... [more]
NUDC_EMENI2.359e-3454.41Nuclear movement protein nudC OS=Emericella nidula... [more]
NUDC_DICDI2.699e-3047.73Nuclear movement protein nudC OS=Dictyostelium dis... [more]
NUDC_SCHPO9.600e-2844.72Nuclear movement protein nudc OS=Schizosaccharomyc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13E11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13E11-J21-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043812 ID=CX043812; Name=CX043812; organism=Citrus sinensis; type=EST; length=690bp
TTTAAATATAGAAAACACTTTCTTTAATTGGCTTTTTCGTGGGTTTTGAC
TCGAAACAAAAGTATTATACAAGAAAGTGTAGCTGAAGAAACAACATAAA
AATAATATGTCACAGAAGGCATCGACTCGCACCATGCTAATTAGATAGCA
ATTGTCCAATCCTTGTTAACAAATATAAACAAAATTCAAACATCTAATAA
GAAGCTTGCGGGGCTGCAAAACAAAACTCGAAATCCACTAGAAACTTTTG
ACGTGCATCCACTGCACATCCTAATAAGGAGACTATTTATGAGATCTTGG
CTCTAGAGAAGTCCATCTCTGGATGCTCAGCCATGAATTTCTTCAAAATC
TCCTGTTTCTGCATCTCGTCGCTGCTCGGCAGGCCCATGGACTTTTGCCT
CTGGTCAAACATCATCTTTTCAACAGTCGACCTAGTCTCTGGATCCAGGT
CAGATAATTTACTGTTCTCAGGTTCAACTTTCTGAGTGTCAATTTCAGGG
CCTCCTTTTATCAGACACTTCCACCACTCCATCTGATTCTGCTTGGTCAA
AAGAATAGAAACAGTTTTCTGGTCCTCTATGCTCCAATAACAATCATCAG
GCTTAACGGCCATATGAAGCTCCCCATCAATTATGGGAGGCTGCCCCTTG
AGTCCAACTTTAAGATGGTTCTTCTTTATCTCACATAAAA
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