CN188230

Overview
NameCN188230
Unique NameCN188230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188230_ssr257 microsatellite CN188230_ssr257:257..271. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_ARATH (Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.608e-59
Identity = 116/176 (65.91%), Postives = 139/176 (78.98%), Query Frame = -2
Query:  249 IGSMVWLLATPSYEEKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIMLKHASXXXXXXXKRRD 776
            IG+M+WLL+ P YE +KR+SLL  +A+ +GAS+GPLI +AI +DPSILI+AFVGT +AF CFS AAM+ARRREY                L FASSIFGGS +IFKFELYFGLL+FVGY+VVDTQ+IIEKAH GD+DYVKHSLTLFTDFVAVFVRILIIMLK+++       KRR+
Sbjct:   72 IGTMIWLLSCPPYEHQKRLSLLFVSAVLEGASVGPLIKVAIDVDPSILITAFVGTAIAFVCFSAAAMLARRREYLYLGGLLSSGLSMLMWLQFASSIFGGSASIFKFELYFGLLIFVGYMVVDTQEIIEKAHLGDMDYVKHSLTLFTDFVAVFVRILIIMLKNSADKEEKKKKRRN 247          
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_ORYSJ (Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN=BI1 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.533e-51
Identity = 98/165 (59.39%), Postives = 126/165 (76.36%), Query Frame = -2
Query:  282 IGSMVWLLATPSYEEKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIMLKHAS 776
            +GS+ WL + P +EE+KR  +L+A AL +GAS+GPLI LA+  D SIL++AFVGT +AF CF+ AA+VA+RREY                L FA+SIFG ST  F FE+YFGLL+F+GY+V DTQ+IIE+AH GD+DY+KH+LTLFTDFVAV VRIL+IMLK+AS
Sbjct:   73 VGSIAWLFSVPVFEERKRFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRREYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDFVAVLVRILVIMLKNAS 237          
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_PIG (Bax inhibitor 1 OS=Sus scrofa GN=TMBIM6 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29
Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = -2
Query:  297 IGSMVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 776
            +G M+WL+ATP S+E E+KR+ LL   A   G  +GP +DL I I+PSIL +AF+GT + F CF+++A+ ARRR Y                     ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF+DFV +F ++++I+
Sbjct:   65 LGLMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALDLCIAINPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSAMSLMVLSSL-GNLFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAENGDKDYIWHCVDLFSDFVTLFRKLMMIL 225          
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_BOVIN (Bax inhibitor 1 OS=Bos taurus GN=TMBIM6 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = -2
Query:  297 IGSMVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 776
            +G M+WL+ATP S+E E+KR+ LL   A   G  +GP +DL I I+PSIL +AF+GT + F CF+++A+ ARRR Y                     ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF DFV +F ++++I+
Sbjct:   65 LGLMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALDLCIAINPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSAMSLMLLSSL-GNLFFGSVWLFQANLYMGLVVMCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMIL 225          
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_MOUSE (Bax inhibitor 1 OS=Mus musculus GN=Tmbim6 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.798e-29
Identity = 68/159 (42.77%), Postives = 99/159 (62.26%), Query Frame = -2
Query:  297 MVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 767
            M+WL+ATP S+E E+KR+ LL   A   G  +GP ++L I ++PSIL +AF+GT + F CFS++A+ ARRR Y                    + +F GS  +F+  LY GLLV  G+++ DTQ IIEKA  GD DY+ H + LF DFV +F ++++I+
Sbjct:   68 MIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAVNPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMLLSSLGN-LFFGSIWLFQANLYLGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCVDLFLDFVTLFRKLMLIL 225          
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_PAROL (Probable Bax inhibitor 1 OS=Paralichthys olivaceus GN=tmbim6 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.069e-28
Identity = 64/162 (39.51%), Postives = 97/162 (59.88%), Query Frame = -2
Query:  297 IGSMVWLLATP--SYEEKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 776
            +G M WL  TP  S  EKKR+++L   A   G  + P +D  I I+PSI+++AF+GT + F CF+++A+ A+RR Y                +   +  FG S  +FK  +Y GLL+  G+++ DTQ IIEKA  GD DYV HS+ LF DF+ +F ++++I+
Sbjct:   65 LGMMFWLAMTPHNSETEKKRLAILAGFAFLTGVGLCPTLDFVIAINPSIIVTAFLGTSVIFVCFTLSALYAKRRSYLFLGGTLMSGLSILFLMSMMNMFFG-SVMLFKAHMYLGLLIMCGFVLXDTQLIIEKAENGDKDYVWHSVDLFLDFITIFRKLMVIL 225          
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_HUMAN (Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.062e-28
Identity = 65/159 (40.88%), Postives = 98/159 (61.64%), Query Frame = -2
Query:  297 MVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 767
            M+WL+ATP S+E E+KR+ LL   A   G  +GP ++  I ++PSIL +AF+GT + F CF+++A+ ARRR Y                    + +F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF DF+ VF ++++I+
Sbjct:   68 MIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGN-VFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMIL 225          
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_RAT (Bax inhibitor 1 OS=Rattus norvegicus GN=Tmbim6 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.049e-28
Identity = 68/159 (42.77%), Postives = 98/159 (61.64%), Query Frame = -2
Query:  297 MVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 767
            M+ L+ATP S+E E+KR+ LL   A   G  +GP ++L I I+PSIL +AF+GT + F CFS++A+ ARRR Y                    + +F GS  +F+  LY GLLV  G+++ DTQ IIEKA  GD DY+ H + LF DFV +F ++++I+
Sbjct:   68 MICLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAINPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMFVSSLGN-LFFGSIWLFQANLYMGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCIDLFLDFVTLFRKLMLIL 225          
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_PONAB (Bax inhibitor 1 OS=Pongo abelii GN=TMBIM6 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.049e-28
Identity = 64/159 (40.25%), Postives = 98/159 (61.64%), Query Frame = -2
Query:  297 MVWLLATP-SYE-EKKRVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 767
            M+WL+ATP S+E E+KR+ LL   A   G  +GP ++  I ++PSIL +AF+GT + F CF+++A+ ARRR Y                    + +F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF DF+ +F ++++I+
Sbjct:   68 MIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCITVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGN-VFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITLFRKLMMIL 225          
BLAST of CN188230 vs. ExPASy Swiss-Prot
Match: BI1_DROME (Probable Bax inhibitor 1 OS=Drosophila melanogaster GN=CG7188 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = -2
Query:  297 RVSLLMATALFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 725
            R+ +L A     G ++GPL+     I+P+I++SA  GT + F   S++A++A + +Y                L   + +F  S  +   +LY G+ V   +IV DTQ+I+EK   G+ D V+H+L LF D +++F R+LII+
Sbjct:   87 RLGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLGGMLVSVINTMALLSLFNMVFK-SYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDVVQHALDLFFDVLSMFRRLLIIL 228          
The following BLAST results are available for this feature:
BLAST of CN188230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BI1_ARATH2.608e-5965.91Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE... [more]
BI1_ORYSJ1.533e-5159.39Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN... [more]
BI1_PIG2.154e-2942.59Bax inhibitor 1 OS=Sus scrofa GN=TMBIM6 PE=2 SV=1[more]
BI1_BOVIN2.154e-2942.59Bax inhibitor 1 OS=Bos taurus GN=TMBIM6 PE=2 SV=1[more]
BI1_MOUSE4.798e-2942.77Bax inhibitor 1 OS=Mus musculus GN=Tmbim6 PE=2 SV=... [more]
BI1_PAROL1.069e-2839.51Probable Bax inhibitor 1 OS=Paralichthys olivaceus... [more]
BI1_HUMAN4.062e-2840.88Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=... [more]
BI1_RAT9.049e-2842.77Bax inhibitor 1 OS=Rattus norvegicus GN=Tmbim6 PE=... [more]
BI1_PONAB9.049e-2840.25Bax inhibitor 1 OS=Pongo abelii GN=TMBIM6 PE=2 SV=... [more]
BI1_DROME3.019e-1532.87Probable Bax inhibitor 1 OS=Drosophila melanogaste... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188230 ID=CN188230; Name=CN188230; organism=Citrus sinensis; type=EST; length=780bp
TTTTTTTTTTTTTTTTTAACAGCAAACAGTGAATTTTATTAAAATGTCGT
TTCAGCACCCACTGGCCATTGTCAAGCAGCAAAATAGCAAAAATTAGCGA
ACACAACTAACCCCATGTATTACATCTGATTGTTAAGAGAGGTACAGCTT
GGAGAAGAGAAGTAAGCACAAGAATATACACAACAAATTTAGTTGTTCTG
CAACCCTTAGTTAAACAAGCACTGTCCGTCCAGCTACCGAGAGATTCAGT
CTCTCCTCTTCTTCTTCTTCTCCTCTTTCTCAGAGGCATGCTTCAACATG
ATTATGAGAATACGAACAAAGACAGCAACAAAGTCAGTGAAAAGAGTCAG
GGAATGCTTGACATAATCCAAGTCTCCAAAGTGAGCTTTCTCAATTATAT
CCTGGGTATCCACCACGATGTAGCCAACAAACACCAACAGCCCAAAGTAT
AACTCAAACTTGAAGATAGCTGTTGAACCACCAAAGATAGAGGAAGCAAA
ATGCAACCAAAGAAGCATGGACAGGCCTGATGAAAGCAAGCCACCAAGAT
AGAGATACTCTCTCCGCCTTGCAACCATGGCAGCTACAGAAAAACAAGCG
AAAGCCAGCCCAGTTCCCACAAATGCAGATATCAGAATGCTTGGGTCAAT
TTGAATGGCGAGATCAATCAAAGGACCAATTGATGCACCTTTAAAGAGAG
CGGTAGCCATGAGCAGAGAAACCCTCTTTTTCTCTTCATAACTAGGGGTT
GCGAGAAGCCAAACCATTGATCCAATCATT
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