CN188208

Overview
NameCN188208
Unique NameCN188208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188208_ssr20 microsatellite CN188208_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.657e-60
Identity = 86/121 (71.07%), Postives = 107/121 (88.43%), Query Frame = -2
Query:  368 FFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 730
            F+D+SLVDGFNLP+ +AP+GGSG  C ++SC AN+N VCP+EL+ KGSDG+VI CKSAC A N+PQYCCTGA+  P+TCPPT +SK+FK+QCPQAYSYAYDD++STF+C GGPNY+ITFCP
Sbjct:  125 FYDVSLVDGFNLPIKLAPRGGSG-DCNSTSCAANINTVCPAELSDKGSDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFCP 244          

HSP 2 Score: 48.1358 bits (113), Expect = 5.657e-60
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = -1
Query:  729 SGKVTCNGNGAAPPASLVEFTIAADKGQDF 818
            SG+++CNG GA+PPASLVE T+A + GQDF
Sbjct:   96 SGQISCNGAGASPPASLVELTLATNGGQDF 125          
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.031e-59
Identity = 88/121 (72.73%), Postives = 105/121 (86.78%), Query Frame = -2
Query:  368 FFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 730
            F+D+SLVDG+NLP+SVA +GG+G  C  +SC+ANVNAVCP+EL VKGSD +V+ACKSAC AFN+PQYCCTGAF+   TCP TKYS+IFK QCPQAYSYAYDD TSTF+C+G P+Y ITFCP
Sbjct:  124 FYDVSLVDGYNLPVSVATRGGTG-DCKATSCRANVNAVCPAELQVKGSDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFCP 243          

HSP 2 Score: 49.2914 bits (116), Expect = 8.031e-59
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = -1
Query:  729 SGKVTCNGNGAAPPASLVEFTIAADKGQDF 818
            +G+V CNGNGA PPASLVE  IAA++G DF
Sbjct:   95 TGQVACNGNGAIPPASLVEINIAANRGMDF 124          
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.944e-58
Identity = 86/121 (71.07%), Postives = 103/121 (85.12%), Query Frame = -2
Query:  368 FFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 730
            F+D+SLVDGFNLP+SVAPQGG+G  C  S+C A++N VCP+ L VKGSDG+VIACKSAC AFN+P+YCCT   +KPETCPP  YSK+FK QCPQAYSYAYDD++STF+C+G P Y ITFCP
Sbjct:  127 FYDVSLVDGFNLPMSVAPQGGTGK-CKASTCPADINKVCPAPLQVKGSDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFCP 246          

HSP 2 Score: 52.7582 bits (125), Expect = 3.944e-58
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = -1
Query:  729 SGKVTCNGNGAAPPASLVEFTIAADKGQDF 818
            SG+V+CNGNGAAPPA+LVE TIA++ GQDF
Sbjct:   98 SGQVSCNGNGAAPPATLVEITIASNGGQDF 127          
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.748e-56
Identity = 86/121 (71.07%), Postives = 97/121 (80.17%), Query Frame = -2
Query:  368 FFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 730
            F+D+SLVDGFNLP+SV PQGG+G  C T+SC ANVNAVCPSEL  KGSDG+V+AC SAC  F  PQYCCT   N PETCPPT YS+IF + CP AYSYAYDD+  TF+C GGPNY ITFCP
Sbjct:  126 FYDVSLVDGFNLPMSVTPQGGTG-DCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 245          

HSP 2 Score: 47.3654 bits (111), Expect = 2.748e-56
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = -1
Query:  729 SGKVTCNGNGAAPPASLVEFTIAADKGQDF 818
            SG+V CNGNGA PPA+L EF I A  GQDF
Sbjct:   97 SGQVMCNGNGAIPPATLAEFNIPAGGGQDF 126          
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.349e-55
Identity = 84/121 (69.42%), Postives = 102/121 (84.30%), Query Frame = -2
Query:  368 FFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 730
            ++D+SLVDGFNLP+SVAPQGG+G  C  SSC ANVN VCP+ L VK +DG+VI+CKSAC AF + +YCCT   N PETCPPT+YS+IF+ QCPQAYSYAYDD+ STF+C+GGP+Y ITFCP
Sbjct:  127 YYDVSLVDGFNLPMSVAPQGGTGE-CKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 246          

HSP 2 Score: 47.7506 bits (112), Expect = 1.349e-55
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = -1
Query:  729 SGKVTCNGNGAAPPASLVEFTIAADKGQDF 818
            SG+V CNG GA PPA+LVE TIAA+ GQD+
Sbjct:   98 SGQVACNGAGAVPPATLVEITIAANGGQDY 127          
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.636e-55
Identity = 82/121 (67.77%), Postives = 102/121 (84.30%), Query Frame = -2
Query:  368 FFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 730
            ++D+SLVDGFNLP+SVAPQGG+G  C  SSC ANVN  CP++L VK +DG+VI+CKSAC AF + +YCCT   + PETCPPT+YS+IF+ QCPQAYSYAYDD+ STF+C+GGP+Y ITFCP
Sbjct:   93 YYDVSLVDGFNLPMSVAPQGGTGE-CKPSSCPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 212          

HSP 2 Score: 47.7506 bits (112), Expect = 6.636e-55
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = -1
Query:  729 SGKVTCNGNGAAPPASLVEFTIAADKGQDF 818
            SG+V CNG GA PPA+LVE TIAA+ GQD+
Sbjct:   64 SGQVACNGAGAVPPATLVEITIAANGGQDY 93          
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.176e-51
Identity = 81/121 (66.94%), Postives = 92/121 (76.03%), Query Frame = -2
Query:  368 FFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 730
            F+D+SLVDGFNLP+SV PQGG+G TC   SC ANVN VCPSEL   GSDG+V+AC SAC  F EPQYCCT      E CPPT YS+IF +QCP AYSYA+DD    F+C+GGPNY ITFCP
Sbjct:  123 FYDVSLVDGFNLPMSVTPQGGTG-TCKMGSCAANVNLVCPSELQKIGSDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFCP 242          

HSP 2 Score: 43.1282 bits (100), Expect = 4.176e-51
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = -1
Query:  729 SGKVTCNGNGAAPPASLVEFTIAADKGQDF 818
            SG++ CNG    PPA+L EFTIAA  GQDF
Sbjct:   94 SGQLMCNGKTGIPPATLAEFTIAAGGGQDF 123          
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.681e-44
Identity = 76/123 (61.79%), Postives = 92/123 (74.80%), Query Frame = -2
Query:  368 KIFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 736
            K F+D+SLVDG+N+ L + P GGSG  C  + C +++NA CP  L V   + NV+ACKSAC  FN  QYCC GA +KPETCPPT YS+IFK+ CP AYSYAYDD TSTF+CTG  NY+ITFCP
Sbjct:  120 KDFYDVSLVDGYNVKLGIRPSGGSG-DCKYAGCVSDLNAACPDMLKVMDQN-NVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGA-NYEITFCP 239          

HSP 2 Score: 35.039 bits (79), Expect = 5.681e-44
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = -1
Query:  729 GKVTCNGNGAAPPASLVEFTIAADKGQDF 815
            G + CNG G  PP +L EFT+  D G+DF
Sbjct:   95 GGLRCNGGGV-PPVTLAEFTLVGDGGKDF 122          
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.869e-38
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = -2
Query:  368 FFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGN-VIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 730
            F+D+SLVDG+NL +S+ P  GSG  C+ + C +++N +CP  L V+  +G  V+ACKSAC+AFN PQYCCTG F  P++C PT YSKIFK  CP+AYSYAYDD TS  +C+   NY +TFCP
Sbjct:  120 FYDVSLVDGYNLAMSIMPVKGSGQ-CSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKA-NYIVTFCP 239          

HSP 2 Score: 30.8018 bits (68), Expect = 1.869e-38
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = -1
Query:  744 GKVTCNGNGAAPPASLVEFTIAAD 815
            G ++CNG G  PPA+L E T+  +
Sbjct:   94 GSLSCNGAGGEPPATLAEITLGPE 117          
BLAST of CN188208 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.799e-33
Identity = 68/124 (54.84%), Postives = 85/124 (68.55%), Query Frame = -2
Query:  368 DKIFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 739
            D+ ++D+SLVDGFN+PL++ P   + A CT  +CKA++NAVCPSEL V G       C SAC  F   QYCC  A+   + CP T YSKIFK+QCPQAYSYA DD T+TF+C  G +Y I FCP
Sbjct:  114 DQDYYDVSLVDGFNIPLAINP---TNAQCTAPACKADINAVCPSELKVDGG------CNSACNVFKTDQYCCRNAY--VDNCPATNYSKIFKNQCPQAYSYAKDD-TATFACASGTDYSIVFCP 225          
The following BLAST results are available for this feature:
BLAST of CN188208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TLP1_PYRPY5.657e-6071.07Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TLP1_CASSA8.031e-5972.73Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLP1_PRUPE3.944e-5871.07Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP_PRUAV2.748e-5671.07Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1A_MALDO1.349e-5569.42Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TP1B_MALDO6.636e-5567.77Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP2_PRUPE4.176e-5166.94Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
PR5_ARATH5.681e-4461.79Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLPH_ARATH1.869e-3856.56Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
PRR3_JUNAS7.799e-3354.84Pathogenesis-related protein OS=Juniperus ashei PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005K19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188208 ID=CN188208; Name=CN188208; organism=Citrus sinensis; type=EST; length=818bp
CCTTTTATGAAACTTTCTCTTATTTATTTATGTTTTGTCATACATACACC
ATGACAAATATTAGCATAGAAAGTCGTCCATTGTCAGGACTTATTTTGTT
GATACAATGTGACAACTTATTACTTTTATTTCAAGCTTACAGAGGATTGA
TGGTGCTATTTTAACTTAAATCTTAACATGAATTTTGAGTCCATGATTTC
ATGCAATTTATTTAACAGAGATGATGAATGAATTTGATACCACAAAAAAT
TATCTTTTATTTTCATCATCTACTATTAAATATTGCATGATATCATTACC
TTAAAATTATGTTAAAATTTTAAGCTGAAAGTTTTAGGCAACCTCCGTTA
CTTACTAATATCTCTCAGGGACAGAAAGTAATATCGTAATTAGGACCACC
AGTGCAAGAAAATGTGCTAGTGCGATCATCATAAGCATAGCTATAAGCTT
GAGGGCACTGGTCTTTGAAAATCTTAGAATATTTAGTCGGTGGGCAAGTC
TCAGGTTTATTGAATGCCCCAGTGCAACAATATTGTGGTTCATTAAAAGC
TGCACATGCACTCTTGCAAGCAATAACATTCCCATCGGATCCTTTGACTG
CTAGCTCTGATGGACAAACAGCATTCACGTTGGCTTTACAGCTAGATGTC
GTGCAAGTAGCACCAGAACCGCCTTGTGGGGCAACTGAAAGAGGCAAGTT
AAAGCCATCAACGAGGCTAAGATCGAAGAAAATCTTGTCCTTTGTCTGCA
GCAATTGTGAATTCCACGAGAGATGCCGGTGGGGCTGCACCATTACCGTT
GCATGTGACTTTGCCTGA
back to top