CK939450

Overview
NameCK939450
Unique NameCK939450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.246e-40
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 3
Query:  102 QEEDKKPNDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 368
            QEEDKKP D  AHINLKVK QDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFL DGRRLR EQTPDEL+MEDGDEIDAMLHQTGG
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93          
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.167e-38
Identity = 80/93 (86.02%), Postives = 83/93 (89.25%), Query Frame = 3
Query:  105 EEDKKP---NDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGML 374
            EEDKKP       AHINLKVK QDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFL DGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.084e-23
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   90 TNTPQEEDKKPNDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 368
            T    ++D KP+ +  HINLKV  QD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL+DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct:   21 TGDTSQQDVKPSTE--HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.901e-18
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = 3
Query:   99 PQEEDKKPNDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 371
            P+E  K  ND   HINLKV  QDG+ V F+IKR T L KLM AYCDRQ + +  I F  DG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.901e-18
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = 3
Query:   99 PQEEDKKPNDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 371
            P+E  K  ND   HINLKV  QDG+ V F+IKR T L KLM AYCDRQ + +  I F  DG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: SUMO3_CHICK (Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.691e-18
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 3
Query:   99 PQEEDKKPNDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 371
            P+E  K  ND   HINLKV  QDG+ V F+IKR T L KLM AYC+RQ + +  I F  DG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGGL 93          
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: SUMO3_HUMAN (Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 3
Query:   99 PQEEDKKPNDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 371
            P+E  K  ND   HINLKV  QDG+ V F+IKR T L KLM AYC+RQ + +  I F  DG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: SUMO3_RAT (Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.483e-17
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 3
Query:   99 PQEEDKKPNDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 368
            P+E  K  ND   HINLKV  QDG+ V F+IKR T L KLM AYC+RQ + +  I F  DG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.483e-17
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 3
Query:   99 PQEEDKKPNDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 368
            P+E  K  ND   HINLKV  QDG+ V F+IKR T L KLM AYC+RQ + +  I F  DG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CK939450 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.483e-17
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 3
Query:   99 PQEEDKKPNDQSAHINLKVKDQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLLDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 368
            P+E  K  ND   HINLKV  QDG+ V F+IKR T L KLM AYC+RQ + +  I F  DG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PREGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
The following BLAST results are available for this feature:
BLAST of CK939450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH1.246e-4089.89Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ1.167e-3886.02Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO3.084e-2354.84Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_XENTR3.901e-1852.75Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA3.901e-1852.75Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_CHICK8.691e-1851.65Small ubiquitin-related modifier 3 OS=Gallus gallu... [more]
SUMO3_HUMAN1.135e-1751.65Small ubiquitin-related modifier 3 OS=Homo sapiens... [more]
SUMO3_RAT1.483e-1752.22Small ubiquitin-related modifier 3 OS=Rattus norve... [more]
SUMO3_MOUSE1.483e-1752.22Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_DANRE1.483e-1752.22Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_D07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939450 ID=CK939450; Name=CK939450; organism=Citrus sinensis; type=EST; length=592bp
GGGGACACAAACGTAGAGATCGAAAGAGCAAGAGATAGCGAGAGAGAGAG
AGTGTGAGAGACGAAGCAGAAGAGAGAATGTCAGGCGTCACGAACACTCC
TCAAGAGGAAGATAAGAAGCCCAACGATCAATCGGCTCACATCAATCTCA
AAGTCAAGGACCAGGATGGGAATGAGGTTTTCTTCAGGATCAAACGAAGC
ACCCAACTAAAGAAGCTTATGAATGCATACTGTGATAGACAATCTGTGGA
GCTGAACTCAATTGCCTTCTTGTTGGATGGTCGCCGTCTTCGAGGAGAGC
AAACCCCTGATGAGCTGGAAATGGAAGATGGTGATGAGATTGATGCCATG
CTGCACCAAACCGGAGGAATGCTGATGTTCTAATTATGTAATACTCGTTT
GAGAGCTTATTAGTAGTATTAATGTAAAACTATTAATGGATGGATGTAAG
TTATGCAGAGGCTCAAGATTGTGTATTTGTGATCTACACCATTATGTTTG
TGTTACCTAAGTATGTAGCTCTTTCTTCCAGAGCCCTGATCGTTGCTGTT
TATATAGAGCTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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