CN188191

Overview
NameCN188191
Unique NameCN188191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.099e-56
Identity = 103/189 (54.50%), Postives = 140/189 (74.07%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  239 ARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.099e-56
Identity = 103/189 (54.50%), Postives = 140/189 (74.07%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  239 ARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.047e-56
Identity = 103/189 (54.50%), Postives = 140/189 (74.07%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  239 ARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 9.015e-56
Identity = 102/189 (53.97%), Postives = 140/189 (74.07%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++V+K G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  239 ARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.177e-55
Identity = 102/189 (53.97%), Postives = 139/189 (73.54%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  239 ARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.177e-55
Identity = 102/189 (53.97%), Postives = 139/189 (73.54%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  239 ARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.177e-55
Identity = 102/189 (53.97%), Postives = 139/189 (73.54%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  239 ARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.177e-55
Identity = 102/189 (53.97%), Postives = 139/189 (73.54%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  239 ARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 8.438e-54
Identity = 99/189 (52.38%), Postives = 140/189 (74.07%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  239 ARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
[Close]
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.438e-54
Identity = 100/189 (52.91%), Postives = 140/189 (74.07%), Query Frame = -3 
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA VST AET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  239 ARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
The following BLAST results are available for this feature:
BLAST of CN188191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIA_RAT3.099e-5654.50Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_CANFA3.099e-5654.50Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_BOVIN4.047e-5654.50Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_MOUSE9.015e-5653.97Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_PONPY1.177e-5553.97Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR1.177e-5553.97Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA1.177e-5553.97Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN1.177e-5553.97Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIB_HUMAN8.438e-5452.38Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_CANFA8.438e-5452.91Rab GDP dissociation inhibitor beta OS=Canis famil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188191 ID=CN188191; Name=CN188191; organism=Citrus sinensis; type=EST; length=849bp
TTTTGAAAGCGGGCCCCCTTTTTAGATGCATGTTTGATATCTACACATTA
GTTCCCACGGCGAACAATTAAAACACGATTCCATTACATAATAATAATAA
TAAAATCACCAACTATGAGAAACAGAAACCATGACAAAGTCCAAGTGTCC
AACCCCCACATTCTTTCGAGCTTTATCCCACTGACGGCATTACATGCGCA
AACATGAACGGGAAGTTGCAGATTCCTCATTCTTCTGCAGCACTGGCAGC
ACTTAAATCCACACTGAGGTCAAGAACCTTTCCGGTTATCATGGTATACA
TGTTCAGTACATCCGTGACAGTTGACTCAAAGTGTGTTGTGGCATCATAG
CTCGTTGAGATAAAGCAATTGTCCAAAGAAGGTTCATTAACTGGTTCATA
TCTGTCATATATATCATAGAATATTTCATCGACTGGACCCAAAAGATCAA
TTCCAGGCTTAAGTTCAGTCTGTGGATGATCAGTCTCTGCCTCAGTCGAT
ACGAATGCAATGAATTTGCCCTTTGGAGCAACATTGTGGGAGTAGGAACA
ACAGAAGAGGTACATGTCTGATCTACGACCCAACTGTTTTTGCGGAAGGA
TAACCTGCACTGAATGGGAATCATTGGTGTTTGGGATTGGGTGGCTCATA
ATAGCGATTGCCCTAGCAACCCTGCCAACCTTCCTCACCTTGTTGGACAA
ATAGGAAGGATCACAAACAACTTTCTTGCACTTTGCAGTTTCCCCTTCTG
ACGTGACACCGACTACTTTACCTTCTTCATCAAACTCTACCTTGCACTCA
GGTTTATTCAACATATACGTCCCACCATAAACAGCACTAAGCCGAGCAA
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