CK939425

Overview
NameCK939425
Unique NameCK939425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1817 contig Csv1_Contig1817:5..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939425 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.213e-33
Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   61 MKLHFTTVVVCSLILSFSLLEPAMAGSPFCDSKCAERCKLAGVQDRCLKYCGMCCEDCKCVPSGTYGNKHEYPCYRDKVNKKGKPKCP 324
            MKL   T+++ +L+++ SL++  MAGS FCDSKC  RC  AG+ DRCLKYCG+CCE+CKCVPSGTYGNKHE PCYRDK N KGK KCP
Sbjct:    1 MKLFLLTLLLVTLVITPSLIQTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of CK939425 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.513e-13
Identity = 28/59 (47.46%), Postives = 34/59 (57.63%), Query Frame = 1
Query:  148 CDSKCAERCKLAGVQDRCLKYCGMCCEDCKCVPSGTYGNKHEYPCYRDKVNKKGKPKCP 324
            C  KC  RC     +  C+ +C  CC  C CVP+GTYGNK   PCY +   K+G PKCP
Sbjct:   54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CK939425 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.884e-12
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 1
Query:  148 CDSKCAERCKLAGVQDRCLKYCGMCCEDCKCVPSGTYGNKHEYPCYRDKVNKKGKPKCP 324
            C  +C  RC     +  C+ +C  CC  C CVP G YGNK   PCY +   ++GKPKCP
Sbjct:   38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CK939425 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 1
Query:  148 CDSKCAERCKLAGVQDRCLKYCGMCCEDCKCVPSGTYGNKHEYPCYRDKVNKKGKPKCP 324
            C S+C  RCK       C+ +C  CC  C CVP G YGNK    CY +   ++G PKCP
Sbjct:   48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
The following BLAST results are available for this feature:
BLAST of CK939425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK1_SOLTU5.213e-3367.05Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC3.513e-1347.46Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC3.884e-1244.07Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH2.517e-1144.07Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004750_G10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939425 ID=CK939425; Name=CK939425; organism=Citrus sinensis; type=EST; length=509bp
TTACGGCCGGGGAATCAATCCTAGTACTAAAGTCACTTACTTGAAAGGAA
AGCAGAAAAAATGAAGCTTCACTTTACAACTGTTGTTGTTTGCTCTCTTA
TCCTCAGCTTCTCTCTCTTGGAGCCTGCCATGGCTGGATCACCCTTTTGT
GACAGCAAGTGTGCGGAAAGGTGCAAGCTAGCAGGAGTGCAGGACCGGTG
CTTGAAGTACTGCGGGATGTGCTGTGAGGACTGCAAGTGTGTGCCTTCTG
GGACTTACGGAAACAAGCATGAGTACCCTTGCTACAGGGACAAGGTTAAC
AAGAAGGGGAAGCCCAAGTGCCCTTGAATTTTGAAACCACATCAAAATTC
AAATGCATCTGCTTTAATTATGTTCTGTAAACAGTAGTATTATTATTGGT
AGTATTATTATATTATGATGGTGGTGGAATGTTAATGCACGTATATTATT
TTTAAATAATAAAAGCTATTGCTCTTGGTGTGAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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