CK939424

Overview
NameCK939424
Unique NameCK939424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_CITSI (Photosystem II reaction center protein H OS=Citrus sinensis GN=psbH PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.144e-33
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGV MALFAVFLSIILEIYNSSVLLDGISLN
Sbjct:    1 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISLN 73          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_DRIGR (Photosystem II reaction center protein H OS=Drimys granadensis GN=psbH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.897e-30
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MATQTVEGSSR+RP+RT+ G LLKPLNSEYGKVAPGWGTTPLMGV MALFA+FLSIILEIYNSSVLLDGIS++
Sbjct:    1 MATQTVEGSSRSRPRRTTTGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSVLLDGISMS 73          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_VITVI (Photosystem II reaction center protein H OS=Vitis vinifera GN=psbH PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.942e-30
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MAT+TVEGSSR+RPK T+ G LLKPLNSEYGKVAPGWGTTPLMGV MALFAVFLSIILEIYNSSVLLDGISLN
Sbjct:    1 MATKTVEGSSRSRPKPTTVGELLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISLN 73          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_OENEH (Photosystem II reaction center protein H OS=Oenothera elata subsp. hookeri GN=psbH PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.942e-30
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MATQT E SSRARPK+T  GGLLKPLNSEYGKVAPGWGTTPLMG+ MALFAVFLSIILEIYNSSVLLDGIS+N
Sbjct:    1 MATQTAEESSRARPKKTGLGGLLKPLNSEYGKVAPGWGTTPLMGLAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_OENAR (Photosystem II reaction center protein H OS=Oenothera argillicola GN=psbH PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.942e-30
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MATQT E SSRARPK+T  GGLLKPLNSEYGKVAPGWGTTPLMG+ MALFAVFLSIILEIYNSSVLLDGIS+N
Sbjct:    1 MATQTAEESSRARPKKTGLGGLLKPLNSEYGKVAPGWGTTPLMGLAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_LOTJA (Photosystem II reaction center protein H OS=Lotus japonicus GN=psbH PE=3 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 4.942e-30
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MATQTVE SSRARP++TS G LLKPLNSEYGKVAPGWGTTPLMG+ MALFA+FLSIILEIYNSS+LLDGIS+N
Sbjct:    1 MATQTVEDSSRARPRQTSVGSLLKPLNSEYGKVAPGWGTTPLMGIAMALFAIFLSIILEIYNSSILLDGISMN 73          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_SPIOL (Photosystem II reaction center protein H OS=Spinacia oleracea GN=psbH PE=1 SV=4)

HSP 1 Score: 130.954 bits (328), Expect = 8.430e-30
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MATQTVE SSR+RPK T+ G LLKPLNSEYGKVAPGWGTTPLMGV MALFAVFLSIILEIYNSSVLLDGIS+N
Sbjct:    1 MATQTVESSSRSRPKPTTVGALLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_EUCGG (Photosystem II reaction center protein H OS=Eucalyptus globulus subsp. globulus GN=psbH PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.101e-29
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MATQTVEGSSR+ P+RT  G LLKPLNSEYGKVAPGWGTTPLMGV MALFAVFLSIILEIYNSSVLLDGIS+N
Sbjct:    1 MATQTVEGSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_TOBAC (Photosystem II reaction center protein H OS=Nicotiana tabacum GN=psbH PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.453e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGV MALFAVFLSIILEIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_SOLTU (Photosystem II reaction center protein H OS=Solanum tuberosum GN=psbH PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.453e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 3
Query:   12 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGV MALFAVFLSIILEIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
The following BLAST results are available for this feature:
BLAST of CK939424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_CITSI2.144e-3398.63Photosystem II reaction center protein H OS=Citrus... [more]
PSBH_DRIGR2.897e-3087.67Photosystem II reaction center protein H OS=Drimys... [more]
PSBH_VITVI4.942e-3090.41Photosystem II reaction center protein H OS=Vitis ... [more]
PSBH_OENEH4.942e-3089.04Photosystem II reaction center protein H OS=Oenoth... [more]
PSBH_OENAR4.942e-3089.04Photosystem II reaction center protein H OS=Oenoth... [more]
PSBH_LOTJA4.942e-3086.30Photosystem II reaction center protein H OS=Lotus ... [more]
PSBH_SPIOL8.430e-3089.04Photosystem II reaction center protein H OS=Spinac... [more]
PSBH_EUCGG1.101e-2989.04Photosystem II reaction center protein H OS=Eucaly... [more]
PSBH_TOBAC2.453e-2987.67Photosystem II reaction center protein H OS=Nicoti... [more]
PSBH_SOLTU2.453e-2987.67Photosystem II reaction center protein H OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_G09 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939424 ID=CK939424; Name=CK939424; organism=Citrus sinensis; type=EST; length=839bp
GGGTAGGATTTATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGT
CCAAAAAGAACTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATA
TGGTAAAGTAGCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGTAA
TGGCTTTATTTGCGGTATTCCTATCTATTATTTTGGAGATTTATAATTCG
TCCGTTTTACTGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAA
TCACAAAATATTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTT
TCGTTGATTGGTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAA
TATGAGTGTGCGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATA
GATCTGTCGTCTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGA
GTATCTGGAGCACGGAATATATGAAATAGATCACGAAGTATTCGAACTAT
GATTCATACTTAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCC
AAAGACAAAATTTGCAATTGCAAGATTTTTCTTCTTTCAAATTCCCCATT
TCTGCTTTTATTTTACTCAAAGCACAAATTTGAATAAATGATGATCCAAG
GATTCTTACTCATGGAATCTTTGGACTTAGTTTGAAGGTTTTATTGAATC
ATCGTGGTTCTAGTATGAATCTGAGGTTTCAATTGATTCATAGGGTCTTA
ACAAGAAAATTCCTAGCAATAATAAAGAAAACAAAAGTCAAGCTGCATTA
CATACAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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