FC921808

Overview
NameFC921808
Unique NameFC921808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12527 contig Csv1_Contig12527:234..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AAT5_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 4.367e-63
Identity = 121/147 (82.31%), Postives = 134/147 (91.16%), Query Frame = 3
Query:    3 TNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK 443
            T+++  F+K KSF RV+M  AV  SRFEG+TMAPPDPILGVSEAFKADT+  KL+LGVGAYRTEELQPYVL+VVKKAENLMLERG+NKEYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAK
Sbjct:   27 TSASNPFLKAKSFSRVTMTVAVKPSRFEGITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNKEYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAK 173          
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AATM_LUPAN (Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.902e-60
Identity = 117/141 (82.98%), Postives = 125/141 (88.65%), Query Frame = 3
Query:   21 FIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK 443
            F   KS  R+SMVAAVNVSRFEG+ MAPPDPILGVSEAF+ADT + KL+LGVGAYRTEELQPYVL VV KAENLMLERG+NKEYL IEGLAAFNK TAELL GADN  +K+QRVATVQGLSGTGSLRL AALIERYFPGAK
Sbjct:   34 FSNAKSSCRISMVAAVNVSRFEGIPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLMLERGQNKEYLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAK 174          
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AATM_BOVIN (Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.675e-30
Identity = 68/130 (52.31%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   42 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 431
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK++LGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F
Sbjct:   20 GLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFF 149          
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AATM_MOUSE (Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.857e-30
Identity = 68/130 (52.31%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   42 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 431
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK++LGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F
Sbjct:   20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFF 149          
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AATC_DAUCA (Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.732e-30
Identity = 68/120 (56.67%), Postives = 89/120 (74.17%), Query Frame = 3
Query:   75 SRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 431
            S F  V  AP DPILGV+ A+  D    KL+LGVGAYRTEE +P VL+VVKKAE +++ ++   KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct:    3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVNDQSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122          
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AATM_PIG (Aspartate aminotransferase, mitochondrial OS=Sus scrofa GN=GOT2 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.874e-30
Identity = 68/130 (52.31%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   42 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 431
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK++LGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A  ++R+F
Sbjct:   20 GLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFF 149          
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AATM_PONAB (Aspartate aminotransferase, mitochondrial OS=Pongo abelii GN=GOT2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.313e-30
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   42 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 431
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK++LGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G ++ VLK  R  TVQ +SGTG+LR+ A+ ++R+F
Sbjct:   20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFF 149          
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AATM_MACFA (Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis GN=GOT2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.313e-30
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   42 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 431
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK++LGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G ++ VLK  R  TVQ +SGTG+LR+ A+ ++R+F
Sbjct:   20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFF 149          
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AATM_HUMAN (Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 8.313e-30
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   42 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 431
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK++LGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G ++ VLK  R  TVQ +SGTG+LR+ A+ ++R+F
Sbjct:   20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFF 149          
BLAST of FC921808 vs. ExPASy Swiss-Prot
Match: AATM_RAT (Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.852e-29
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   42 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLDLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 431
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK++LGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G ++ VLK  R  TVQ +SGTG+LR+ A+ ++R+F
Sbjct:   20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAGKNLDKEYLPIGGLADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFLQRFF 149          
The following BLAST results are available for this feature:
BLAST of FC921808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
AAT5_ARATH4.367e-6382.31Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AATM_LUPAN5.902e-6082.98Aspartate aminotransferase P2, mitochondrial (Frag... [more]
AATM_BOVIN1.675e-3052.31Aspartate aminotransferase, mitochondrial OS=Bos t... [more]
AATM_MOUSE2.857e-3052.31Aspartate aminotransferase, mitochondrial OS=Mus m... [more]
AATC_DAUCA3.732e-3056.67Aspartate aminotransferase, cytoplasmic OS=Daucus ... [more]
AATM_PIG4.874e-3052.31Aspartate aminotransferase, mitochondrial OS=Sus s... [more]
AATM_PONAB8.313e-3051.54Aspartate aminotransferase, mitochondrial OS=Pongo... [more]
AATM_MACFA8.313e-3051.54Aspartate aminotransferase, mitochondrial OS=Macac... [more]
AATM_HUMAN8.313e-3051.54Aspartate aminotransferase, mitochondrial OS=Homo ... [more]
AATM_RAT1.852e-2951.54Aspartate aminotransferase, mitochondrial OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionC06052F03T7 RindPdigS Citrus sinensis cDNA clone C06052F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921808 ID=FC921808; Name=FC921808; organism=Citrus sinensis; type=EST; length=443bp
CCACTAATTCCACAGCAGGATTCATTAAGACTAAATCCTTTGGTCGAGTA
TCTATGGTTGCTGCTGTCAATGTTTCTCGTTTTGAGGGTGTAACGATGGC
TCCCCCCGATCCAATTCTTGGAGTTTCTGAAGCTTTTAAAGCTGACACAG
ATGAAAAGAAACTCGACCTTGGAGTCGGTGCTTATCGAACCGAAGAGCTA
CAGCCTTATGTGCTTGATGTTGTTAAGAAGGCAGAGAATCTTATGCTGGA
AAGGGGGGAAAACAAGGAGTATCTTCCAATTGAAGGTTTGGCTGCATTCA
ATAAGGTGACAGCAGAGTTATTGTTTGGAGCTGACAACTCAGTGCTAAAG
GAACAAAGAGTTGCAACAGTTCAAGGTCTTTCAGGAACCGGTTCTCTTCG
GCTGGCTGCAGCTCTTATAGAACGATATTTTCCTGGGGCAAAA
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