CN188119

Overview
NameCN188119
Unique NameCN188119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.758e-54
Identity = 115/170 (67.65%), Postives = 122/170 (71.76%), Query Frame = -3 
Query:  315 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 824
            NVERLNLLKLAPGGHLGRF+VWTKSAFEKLD IYG FDK SEKK GYVLPR+KMVNADLARIINSDEVQSVV PI+   KRA                 PYAKTARRMSLLAEA+RV           KPI+            AWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  239 NVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.028e-53
Identity = 109/170 (64.12%), Postives = 122/170 (71.76%), Query Frame = -3 
Query:  315 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 824
            +VERLNLLKLAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDE+QSVV PIK + KRA                 PYAKTA+RMSLLAEAQRV           K +T            +WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  237 HVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.611e-52
Identity = 111/170 (65.29%), Postives = 120/170 (70.59%), Query Frame = -3 
Query:  315 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 824
            +VERLNLLKLAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDEVQSVV PIK   KRA                 PYAKTA+RMSLLAEA RV           K +T            AWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  238 HVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.595e-25
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = -3 
Query:  582 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKR 824
            NV RLNLLKLAPGGHLGRFI+WTKSAFE+LD  +G F K S +KKGY LPR  + NAD+ R++NSDE+Q+ VR  K  VKR
Sbjct:  230 NVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.816e-22
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = -3 
Query:  474 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 824
            NV +LNLL+LAPGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                  PYAKTARR ++L + + +
Sbjct:  230 NVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.816e-22
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = -3 
Query:  474 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 824
            NV +LNLL+LAPGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                  PYAKTARR ++L + + +
Sbjct:  235 NVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.677e-22
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = -3 
Query:  480 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 824
            NV +LN+LKLAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  231 NVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 105.531 bits (262), Expect = 3.677e-22
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = -3 
Query:  480 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 824
            NV +LN+LKLAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  231 NVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.273e-22
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = -3 
Query:  480 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 824
            NV +LN+LKLAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  231 NVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
[Close]
BLAST of CN188119 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.273e-22
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = -3 
Query:  480 NVERLNLLKLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 824
            NV +LN+LKLAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  231 NVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
The following BLAST results are available for this feature:
BLAST of CN188119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL4_PRUAR4.758e-5467.6560S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH4.028e-5364.1260S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH2.611e-5265.2960S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_DICDI1.595e-2566.6760S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4B_XENLA2.816e-2245.3060S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4A_XENLA2.816e-2245.3060S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_PONAB3.677e-2245.2260S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_HUMAN3.677e-2245.2260S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT6.273e-2245.2260S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MOUSE6.273e-2245.2260S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005I11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188119 ID=CN188119; Name=CN188119; organism=Citrus sinensis; type=EST; length=826bp
GCCCCCTTTTTTTTTTTTCAGTATAATTGCAATTTATCCATTAGATAGTA
CCATTAAGACAATGAATCCGTCTCCTAAAACATATAACTCCAATTCTAAC
ATTGAAGAAAATACTTCCACCTAGTCGATAGAGACAAAAAATGCAGGAAG
GAGAAACAAAAGTCTACACATTTCCCAAATCCACTCATCTTCCTCCCACA
CATTCTCATCCATGACTCAAAAGAGCTAAAGAGACTACGATTCAACAACA
AATCCAGAAAAGATAAACAAAATATTGTCTTGAAAACAAAATTTAAAAAC
CAACAATCAGATTACTGTGAGACACCCAACCATTTTGAGAAGTTCTCAAA
CTCAGTATAATCACTGTCTGAGATCATCGTCTGGTACCATGCCTTGCCTG
CAGCCTTGATCGCAGCGGCCTCCTCCTTAGTGATGGGCTTCCTTTTCTTG
TCGAGCTTCTCCTTCTTAGCTTTAACCCGTTGTGCCTCAGCCAAAAGAGA
CATCCTCCGAGCAGTCTTAGCATATGGGTTCAACCGCAACAGAGTATTCA
AGTTCTTGAGAGGATTTTTCTTCATCGGAGCCCTCTTAACCTCCGTCTTA
ATCGGCCTTACAACAGACTGCACCTCATCCGAGTTAATAATCCTAGCCAA
ATCAGCGTTGACCATCTTAGCACGAGGCAGCACATAACCCTTCTTCTTCT
CGGAACCCTTATCAAACTTACCATAAATCTCATCAAGCTTCTCAAAAGCC
GATTTAGTCCAAACAATAAACCGCCCGAGATGGCCACCCGGCGCCAGCTT
CAACAAGTTCAATCTCTCAACATTCA
back to top