CN188115

Overview
NameCN188115
Unique NameCN188115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188115_ssr147 microsatellite CN188115_ssr147:147..158. BLAST: Citrus ESTs to Prunus persica proteins V1
CN188115_ssr59 microsatellite CN188115_ssr59:59..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2568 contig Csv1_Contig2568:197..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188115 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.390e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = -3 
Query:  375 FKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 650
            FKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    6 FKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97
[Close]
BLAST of CN188115 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = -3 
Query:  378 KLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 641
            KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    9 KLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104
[Close]
BLAST of CN188115 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.580e-19
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = -3 
Query:  378 KLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 641
            K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    9 KFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104
The following BLAST results are available for this feature:
BLAST of CN188115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI5.390e-46100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.337e-2056.25Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI9.580e-1953.13Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188115 ID=CN188115; Name=CN188115; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTGGGATAATTATCCAAACTAGTATCCGGACTGAG
GCCGTTGGATTTATTTATTTATTTATTAATCTGCTACACATGGTCCCAAT
CCTGGACTTTAATTACAGTCTGGGATCCCAGACCGCATAACCCCTCTATA
TATATATAAAAGTAATTTTGCAATACAGGAATTCTTTACTTTTATTGACA
AGTTAATAGACAAAATCATGGAAATGCACTATTAAAAGTTGTCAATAACA
GTTGATATCAATACAACAGCAAAGACTTAAGAGTGAGTCAAAATTGCTAC
TGTAACAACATCACTTAAAAAGTTAAAGCACCGCTAACAGCAAAGGATCT
GCTGCTATGCGCCACCACTCCCTAGTGTGCCCTGACTTTGTGGTTCAACA
GCATCTCTCGAAGCTCTGCTGGATCAATCTCGACCGCCCGATTCTCCGGC
CTGTAGTACCCAGTGATGGGATCTGGGGCCCAGGCAGAAGAGGCCCCAGA
ATCCTCTCTCACCGCAGGCCTCAAATCATTTTTCTCCATGATACCAGTCC
GAGATATGGTCCCCAAGGGTGCTGCTGCAGCATATCCTCTCCTGCTAATG
GAGAGCGAGATGCCATCAGCAACAGGAGCAAGAAGAAGCTTAGCTTTGAA
AGAGAGAGCGGGCCATTGTTTTATTTACTTATAGAACTTAATAGATATGA
AGATAGCTAGCTGGGATGTTTCTGTACAGTGCTACTACAGAAGAAGAAAG
ATTCTGC
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