CK939274

Overview
NameCK939274
Unique NameCK939274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2170 contig Csv1_Contig2170:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK939274 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 3 
Query:    9 IRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 263
            IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG+K  + +  W +       P+K++L+ +
Sbjct:  812 IRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 895
[Close]
BLAST of CK939274 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 3 
Query:    9 IRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 263
            IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG+K  + +  W +       P+K++L+ +
Sbjct:  812 IRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 895
[Close]
BLAST of CK939274 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 3 
Query:    9 IRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 263
            IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG+K  + +  W +       P+K++L+ +
Sbjct:  812 IRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 895
[Close]
BLAST of CK939274 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:    9 IRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 263
            IRD+ EK+ AFRG+C M+  NP G +   +F C A+ASW   + ++L +   ++LHG+K  +    W Q      P +K++L+ +
Sbjct:  811 IRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEDNWQQFSEQFPPLLKERLAAF 894
[Close]
BLAST of CK939274 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:    9 IRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 263
            IRD+ EK+ AFRG+C M+  NP G +   +F C A+ASW   + ++L +   ++LHG+K  +    W Q      P +K++L+ +
Sbjct:  801 IRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAF 884
The following BLAST results are available for this feature:
BLAST of CK939274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TNPO1_MOUSE2.355e-1336.47Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2[more]
TNPO1_HUMAN2.355e-1336.47Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2[more]
TNPO1_BOVIN2.355e-1336.47Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2[more]
TNPO2_HUMAN7.576e-1235.29Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3[more]
TNPO2_MOUSE9.894e-1235.29Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004752_H02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939274 ID=CK939274; Name=CK939274; organism=Citrus sinensis; type=EST; length=699bp
GGGCTATGATCCGTGATGATACTGAAAAGGAGGATGCATTCCGAGGTCTT
TGTGCAATGGTAAAAGCGAATCCATCAGGGGCTCTAAGTTCACTTGTTTT
CATGTGCAGAGCCATTGCTAGTTGGCATGAAATAAGAAGTGAAGAGCTAC
ATAATGAAGTTTGCCAGGTGTTGCATGGTTATAAACAGATGCTTAGAAAT
GGAGCATGGGACCAGTGTATGTCTGCTTTGGAGCCCCCAGTGAAGGACAA
GCTGTCAAAATATCAAGTGCATGACAGTATAGTCACCTTAATCATTAAAG
CTTGAAGTTGCTATCCTCTCCAAACATTTATATATGCATCGGTCCTCCCC
CGCAGCATTGGGTCTTAAGAAATGAAGCAACCTGAGGTTTGAATGTGGAT
ATGTACAGGGTGCAGCTTTTCAAGCTTTTGGGAGTATTTATCTTAGCGTT
TAGTGTTTCAAGGGTGACCAAAAGTATTAATTAAGGCTTTTGGTTCATGG
TTTTTAAATGTCGGTCGAGTTTTCTTTTTCTTATTATTTCAGCTGATAGG
CGACGGTTGGGTTTTCCACAGATTTTGTACAAGGGCTTTTAGCATCAATT
TATTAATAGTTCATCGTGAGTTGTGTTAAATCTTGTAACTTCGATGTCTG
AGACAATTAATTCTTTATGCATTCAACAATTGTGAATTTTGGGTTGTGG
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