CN188111

Overview
NameCN188111
Unique NameCN188111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.637e-36
Identity = 70/168 (41.67%), Postives = 86/168 (51.19%), Query Frame = -3
Query:  356 IDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYAXXXXXXXXXXXXXXXXXXXXXXXXXPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAK 859
            +DH V+ VGYG++NG+DYWIV+NSWG  WG  GY  + R+ ++  GKC I  MASYP K                                C D   CP+G TCCC FGF + C ++GCCP E A CC     CCP DYP+C+   G C       L V A  R LAK
Sbjct:  300 LDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVTTGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHV-----CDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.647e-36
Identity = 70/171 (40.94%), Postives = 90/171 (52.63%), Query Frame = -3
Query:  347 IDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYAXXXXXXXXXXXXXXXXXXXXXXXXXPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAKHKL 859
            +DH V  VGYG+ENG+DYWIV+NSWG SWG  GY  + R+     GKC I    SYP+K+                            PT C ++  CP   TCCCI+ +  +C+ +GCCP E A CC     CCP +YPIC++++G CL      L V A  R LAK  L
Sbjct:  287 LDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKASSGKCGIAVEPSYPLKKG-----------ENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKPNL 446          
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.126e-36
Identity = 67/164 (40.85%), Postives = 86/164 (52.44%), Query Frame = -3
Query:  368 IDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYAXXXXXXXXXXXXXXXXXXXXXXXXXPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSR 859
            +DH V+ VGYG+ENG+DYWIV+NSWG SWG  GY  + R+ +   GKC I    SYPIK                             PTQC  +  CP   TCCC+F +  +C+ +GCCP E A CC     CCP +YP+CD+++G CL        V A  R
Sbjct:  295 LDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASSSGKCGIAIEPSYPIKNG-----------ENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKR 447          
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.001e-34
Identity = 68/168 (40.48%), Postives = 89/168 (52.98%), Query Frame = -3
Query:  356 IDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYAXXXXXXXXXXXXXXXXXXXXXXXXXPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLKKYGDYLGVAAKSRMLAK 859
            +DH V+I GYG+ENG DYWIV+NSWG +   +GY  + R+ S   G C +    SYP+K                             PT+C ++S C  G TCCCI  F   C+ +GCCP E A CC     CCP DYPIC++ +G C    G+ LGV A  R+LA+
Sbjct:  176 VDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSSSGLCGLAIEPSYPVKTG-----------PNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQ 332          
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.991e-30
Identity = 60/153 (39.22%), Postives = 80/153 (52.29%), Query Frame = -3
Query:  407 IDHAVLIVGYGSE--NGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESYAXXXXXXXXXXXXXXXXXXXXXXXXXPTQCGDFSYCPSGETCCCIFGFLDFCWIYGCCPYENAVCCSGTQDCCPADYPICDIEEGLCLK 859
            +DH V+ VGYG++   G  YW V+NSWG  WG +GY  + R+ +   GKC I  MASYPIK+                            P QC  +S CP+G TCCC +G  + C ++GCCP E A CC     CCP +YP+C+ +   C K
Sbjct:  315 LDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTARTGKCGIAMMASYPIKKG-------------PNPKPSPPSPAPSPPQQCDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSK 454          
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -3
Query:  677 IDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKES 859
            +DHAV+ VGYGSENG DYWIV+NSWGT WG DGY  + R+ + + GKC I   ASYP+K S
Sbjct:  258 MDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVASKSGKCGIAIEASYPVKYS 318          
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.081e-15
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = -3
Query:  674 IDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKESY 859
            +DH V++VGYGS +GEDYWI++NSWG +WG  GY  + R+    +GKC I  M SYP K S+
Sbjct:  291 LDHGVVVVGYGSTSGEDYWIIRNSWGLNWGDSGYVKLQRNIDDPFGKCGIAMMPSYPTKSSF 352          
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  680 IDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIKE 859
            I+H VL+VGYGS +G DYWI KNSWG  WG DGY +I R+T    G C +N  ASYP KE
Sbjct:  299 INHFVLLVGYGSADGVDYWIAKNSWGFDWGEDGYIWIQRNTGNLLGVCGMNYFASYPTKE 358          
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = -3
Query:  677 IDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRD-TSLEYGKCAINAMASYPIKES 859
            +DHAV+ VGYGSENG DYWIV+NSWG  WG +GY  + R+  + + GKC I   ASYP+K S
Sbjct:  303 LDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASYPVKYS 364          
BLAST of CN188111 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.742e-14
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = -3
Query:  683 IDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDTSLEYGKCAINAMASYPIK 859
            IDHAV IVGYG+E G DYWIVKNSW T+WG +GY  I R+     G C I  M SYP+K
Sbjct:  286 IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVG-GAGTCGIATMPSYPVK 343          
The following BLAST results are available for this feature:
BLAST of CN188111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ORYB_ORYSJ1.637e-3641.67Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
ORYA_ORYSJ3.647e-3640.94Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH8.126e-3640.85Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC2.001e-3440.48Low-temperature-induced cysteine proteinase (Fragm... [more]
CYSP1_ORYSJ2.991e-3039.22Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CYSP4_BRANA8.448e-1762.30Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPR1_ARATH2.081e-1553.23Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
P34_SOYBN4.636e-1560.00P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
GCP1_ARATH1.761e-1458.06Germination-specific cysteine protease 1 OS=Arabid... [more]
ACTN_ACTDE8.742e-1461.02Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188111 ID=CN188111; Name=CN188111; organism=Citrus sinensis; type=EST; length=861bp
TTTTTTTTTTTTTTTTTATACAAAGCAAACCGCAGAATAAGTCATTTACT
GTGATAAAACCCCATATGACAACGAGGCCTGGATTATGATGCTAAAGTGG
CTTCAATTTGAACAACCTTTCAAGCCATGAGATATGGACAAAAATTTTAA
GGGCTGTTTCCCAGAAACTATTTAGAAGAAAAAAGCGACATAGCAAGAGT
GAAGGCAACCTTCAAAGTTCAAAGTTCACACTCAACGAGACGATAAATGA
ATGTTGCTCATTTATTTAGCGTATTGCAGCAAATGGGTTCCTCTTCCACT
GAAGAGATTGGTGCATCTTCTCTGTTTCCTCAATTTTAGTCCATGGCAAC
TTATGCTTAGCCAGCATTCGGCTCTTTGCCGCTACTCCCAGGTAATCTCC
GTACTTCTTGAGGCAGAGCCCTTCTTCAATATCACAAATAGGATAATCAG
CAGGGCAGCAGTCTTGAGTTCCAGAGCAGCAAACAGCATTCTCATAGGGA
CAGCAGCCATAGATCCAGCAAAAATCCAAGAACCCAAAAATGCAACAACA
GGTTTCACCACTTGGACAATAGGAAAAGTCTCCGCATTGAGTTGGTGATG
GAGATGGAGGTGGTGGTGGTGGCGGTGACGGTAGCGGGGGTGGCTCGGAT
GGTGGTGAATAGGGAGATGGTGCATAGGATTCTTTGATTGGATAAGAAGC
CATAGCATTGATGGCACATTTACCATATTCTAAACTGGTGTCCCTTGTTA
TGTAAAAGTATCCGTCAATTCCCCAACTTGTTCCCCAAGAATTCTTTACA
ATCCAATAATCTTCACCATTTTCAGAGCCATAACCAACTATCAAAACCGC
ATGATCAATGT
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