CN188107

Overview
NameCN188107
Unique NameCN188107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.410e-29
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = 2
Query:  299 PKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 619
            P ++   NI  DV+QLIG TP+V+LN + +GC A IA K E+ +P  S+KDR   +M+ DAE K LISPGKT ++EPTSGN GI +AF+AA +GYK++LTMP+  SL
Sbjct:   59 PTEIEGLNIAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSL 165          
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.574e-28
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 2
Query:  239 VSSQPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 619
            VSS P    + S +      P  +   NI  DVSQLIG+TP+V+LN VS+G  A IA K E  +P  S+KDR   +M++DAE K +I+PGKTT++EPTSGN GI +AF+AA +GYK+ LTMP+  S+
Sbjct:   44 VSSSPITCKAVSLSP-----PSTIEGLNIAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSM 165          
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.056e-28
Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 2
Query:  305 DLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 619
            ++   NI  DV+QLIG TP+V+LN +++GC A IA K E+ +P  S+KDR   +M+ DAE K LISPGKT ++EPTSGN GI +AF+AA +GYK++LTMP+  SL
Sbjct:   63 EIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSL 167          
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.981e-28
Identity = 59/100 (59.00%), Postives = 77/100 (77.00%), Query Frame = 2
Query:  320 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 619
            +I  DV+ LIG TPLV+LNKV +GC A IA K E+ +P +S+KDR   +M+ DAE K LI+PGK+ +IEPTSGN GI +AFMAA KGYK++LTMP+  S+
Sbjct:    7 SIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSM 106          
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.969e-27
Identity = 55/101 (54.46%), Postives = 79/101 (78.22%), Query Frame = 2
Query:  317 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 619
            + I +DV++LIG TPLV+LN+V +GC A +A K EM +P +S+KDR   +M+ DAENK LI+PG++ +IEPTSGN GI +AF+AA KGY++++ MP+  SL
Sbjct:    6 STIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSL 106          
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.969e-27
Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 2
Query:  323 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 619
            I +DV++LIG TPLV+LN+V++GC   +A K E  +P +S+KDR   +M+ DAE K LI+PGK+ +IEPTSGN GI +AFMAA KGY++VLTMP+  S+
Sbjct:    5 IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSM 103          
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.969e-27
Identity = 55/102 (53.92%), Postives = 77/102 (75.49%), Query Frame = 2
Query:  314 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 619
            A+ I +DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S+
Sbjct:    2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSV 103          
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.877e-27
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 2
Query:  314 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTS 616
            A+ I +DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S
Sbjct:    2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMS 102          
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.064e-27
Identity = 56/99 (56.57%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  323 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 619
            I +DV++LIG TPLV+LN V +GC A +A K E  +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AFMAA KGYK+++TMPS  SL
Sbjct:    8 IAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSL 106          
BLAST of CN188107 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.637e-27
Identity = 56/99 (56.57%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  323 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSL 619
            I +DV++LIG TPLV+LNKV++GC   +A K E  +P +S+KDR   +M+ DAE K  I PGK+ +IEPTSGN GI +AFMAA KGY++VLTMP+  S+
Sbjct:    9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSM 107          
The following BLAST results are available for this feature:
BLAST of CN188107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CYSKP_CAPAN5.410e-2955.14Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SPIOL1.574e-2850.39Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SOLTU2.056e-2855.24Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK2_ORYSJ5.981e-2859.00Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_CITLA2.969e-2754.46Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK1_ORYSJ2.969e-2756.57Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK1_BRAJU2.969e-2753.92Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK1_ARATH3.877e-2754.46Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK_SOLTU5.064e-2756.57Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK_WHEAT8.637e-2756.57Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188107 ID=CN188107; Name=CN188107; organism=Citrus sinensis; type=EST; length=620bp
GAGGCCACCACGCACCTTCTACATACTACCATCACCACACTCAGAGCCTT
AATTTGTTATCCGCTGCAAGTGCTGGTGGAAGTGGGAGTGGTTCTTGTAA
AGAGTGAATTATTATTTTTGCTCAAATTTAAAGTTCCTCCTCCAACCTCC
ATTATTATTAAAAATGGCTGCTGCTTTGAGGAGTTTCTTGAAGAAAAGAG
CCTTAACATGCAGCGAACCCATGTTGATGAGAAGACTGGTCTCCTCACAG
CCGGCGCCGGTTGATTCTTCATCTTTTGCTCAGAGACTCAGAGATTTGCC
CAAGGATCTTCCAGCTACCAACATCAAGAGAGATGTTTCCCAGCTCATTG
GAAGAACCCCGCTTGTGTTTCTTAACAAAGTCAGTGAAGGATGTGGAGCT
TATATTGCTGTCAAGCAAGAAATGTTCCAACCCACTGCTAGCATCAAGGA
CAGACCAGCAGTGGCCATGCTCGAAGATGCAGAAAATAAAAACTTAATTT
CTCCCGGAAAGACCACTATCATAGAGCCCACGTCAGGGAACATGGGAATA
AGCATGGCGTTTATGGCAGCAATGAAAGGGTATAAGATGGTTCTAACTAT
GCCCTCTTATACAAGCTTGG
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