CN188100

Overview
NameCN188100
Unique NameCN188100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188100_ssr628 microsatellite CN188100_ssr628:628..639. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2760 contig Csv1_Contig2760:129..983. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188100 vs. ExPASy Swiss-Prot
Match: AAH_ARATH (Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH PE=2 SV=2)

HSP 1 Score: 407.527 bits (1046), Expect = 4.760e-113
Identity = 197/265 (74.34%), Postives = 232/265 (87.55%), Query Frame = -3
Query:   56 EESLLQLKYDPASVWGYIEVHMKQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVLAFLETHV 850
            +E+L+QLKYDPASVWGY+EVH++QGPVLEWVG+PLGVV+GIAGQTRLKVTV+GSQGHAGTVPMSMRQDPMT AAELIVLLE +CK+PKD+LS + +            LVCTVGEIS+WPSASNVIPG+VTFTVDLR IDD GR+ +L++LS ++YQIC+KRS+ C +ERKHDA+AVM D  LS QLKSA+ +ALK+MTG  Q E+PV+MSGAGHDAMAM+HLTKVGMLFVRCRGGISHSPAEHVLDDDV AAGLA+L FLE+ +
Sbjct:  261 DENLMQLKYDPASVWGYVEVHIEQGPVLEWVGYPLGVVKGIAGQTRLKVTVKGSQGHAGTVPMSMRQDPMTGAAELIVLLESVCKNPKDYLSCNVQCNEDTVESLANSLVCTVGEISTWPSASNVIPGQVTFTVDLRTIDDVGRKAILHDLSTRMYQICDKRSLLCSIERKHDADAVMSDPQLSLQLKSAAQSALKKMTGEVQDEVPVLMSGAGHDAMAMAHLTKVGMLFVRCRGGISHSPAEHVLDDDVGAAGLAILEFLESQM 525          
BLAST of CN188100 vs. ExPASy Swiss-Prot
Match: HYUC_PSESN (Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671) GN=hyuC PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.115e-40
Identity = 89/234 (38.03%), Postives = 136/234 (58.12%), Query Frame = -3
Query:  101 YIEVHMKQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDV 802
            Y E+H++QGP LE   +P+G+V GIAG +  KV + G  GHAGTVPMS+R+DP+  AAE+I  +E LC +  +                    V TVG I+++P  SN+IP  V FT+D+R I+   R  ++ ++  ++  +   R +   +E+   A  V C  +L +        +LK+     + + P+I+SGAGHDAM ++ +T++GM+FVRCR GISHSP E    DD+
Sbjct:  191 YFEMHIEQGPYLEKNNYPIGIVSGIAGPSWFKVRLVGEAGHAGTVPMSLRKDPLVGAAEVIKEVETLCMNDPN-----------------APTVGTVGRIAAFPGGSNIIPESVEFTLDIRDIELERRNKIIEKIEEKIKLVSNTRGLEYQIEKNMAAVPVKCSENLIN--------SLKQSCKELEIDAPIIVSGAGHDAMFLAEITEIGMVFVRCRNGISHSPKEWAEIDDI 399          
BLAST of CN188100 vs. ExPASy Swiss-Prot
Match: AMAB2_BACST (N-carbamoyl-L-amino acid hydrolase OS=Bacillus stearothermophilus GN=amaB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.978e-34
Identity = 91/257 (35.41%), Postives = 140/257 (54.47%), Query Frame = -3
Query:   77 ESLLQLKYDPASVWGYIEVHMKQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 847
            + L Q    P +V  Y+E+H++QG VLE  G P+G+V GIAG   +K T+ G   HAG  PMS+R+DPM AAA++I+++E   +                        V TVG++  +P   NVIP  V F +DLR +    R+ V   ++ +   I ++R+V    ER  +   V+C    S ++K A+ AA +++ G     +P   SGA HD++ ++ +  +GM+FVR + G+SHSPAE    +D  AAG  VL
Sbjct:  170 DRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR-------------------TGTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRVTTERLQEMPPVLC----SDEVKRAAEAACQKL-GYPSFWLP---SGAAHDSVQLAPICPIGMIFVRSQDGVSHSPAEWSTKEDC-AAGAEVL 398          
BLAST of CN188100 vs. ExPASy Swiss-Prot
Match: AMAB1_BACST (N-carbamoyl-L-amino acid hydrolase OS=Bacillus stearothermophilus GN=amaB PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.363e-33
Identity = 90/257 (35.02%), Postives = 136/257 (52.92%), Query Frame = -3
Query:   77 ESLLQLKYDPASVWGYIEVHMKQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 847
            + L Q    P +V  Y+E+H++QG VLE  G P+G+V GIAG   +K T+ G   HAG  PMS+R+DPM AAA++I+++E   +                        V TVG++  +P   NVIP  V F +DLR +    R+ V   ++ +   I ++R+V    ER  +   V+C    S  +K A+  A K++ G     +P   SGA HD + ++ +  +GM+FVR + G+SHSPAE    +D  A G  VL
Sbjct:  170 DRLPQAARKPGTVKAYVELHIEQGRVLEEAGLPVGIVTGIAGLIWVKFTIAGPAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR-------------------TGTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRLTTERLQEMAPVLC----SEVVKQAAERACKQL-GYPPFWLP---SGAAHDGVQLAPICPIGMIFVRSQDGVSHSPAEWSTKEDC-AVGAEVL 398          
BLAST of CN188100 vs. ExPASy Swiss-Prot
Match: ALLC_ECOLI (Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.051e-24
Identity = 77/245 (31.43%), Postives = 113/245 (46.12%), Query Frame = -3
Query:   68 YIEVHMKQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVLAFL 802
            ++E+H++QG VLE  G  +GVV  I GQ R  VT+ G   HAGT PM  R+D + A         R+C    +     G             LV T G++   P+  NV+PG+ TFT+D R  D A       +L N +  IC++  +   ++   D   V  + +L         A L  +    +    V+ SGAGHDA   +      M+F+    GISH+PAE     D+ A G+  LA +
Sbjct:  186 FVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYA-------FSRICHQSVEKAKRMG-----------DPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKEL--------VATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDL-AEGVKTLALM 403          
BLAST of CN188100 vs. ExPASy Swiss-Prot
Match: Y588_HAEIN (Uncharacterized hydrolase HI0588 OS=Haemophilus influenzae GN=HI0588 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.052e-23
Identity = 74/253 (29.25%), Postives = 117/253 (46.25%), Query Frame = -3
Query:   77 QLKYDPASVWGYIEVHMKQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 835
            Q K D      + E+H++QGP LE  G  +GVV GIA   R  V ++G   H+G   M  R D +   +EL + +ER                           V TVG I++ P   NV+PG     VD+R      R++V   L  ++ ++ EKR +   ++     N ++   ++ +Q+   ++        +  +   ++ SGAGHDAM M+ L   GM+F+    GISH+P E     D+  AG+ VL
Sbjct:  175 QAKRDAKEFKCFFELHIEQGPRLENEGKTIGVVTGIAAPIRAIVKIKGQADHSGATAMHYRHDALLGGSELSLAIERAA------------------IQAGHSTVATVGNITAKPGVMNVVPGYCELLVDIRGTHVQARDSVFELLQEEISKVSEKRGLLIELQLISKDNPIILPENMVNQIAETAH--------SLGYSYEIMPSGAGHDAMHMATLCPTGMIFIPSHLGISHNPLEFTDWKDI-EAGIKVL 400          
BLAST of CN188100 vs. ExPASy Swiss-Prot
Match: ALLC_BACSU (Allantoate amidohydrolase OS=Bacillus subtilis GN=pucF PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.570e-23
Identity = 74/230 (32.17%), Postives = 116/230 (50.43%), Query Frame = -3
Query:  119 YIEVHMKQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELI-VLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASY-AALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEH 802
            ++E+H++QG  LE  G  LG+V  IAGQ R  VT+ G   HAGT  M  R+DP+ A++ +I  LL R  + P +                      T G+I++ P+ +NVIPG V F++D+R       E    ++   +  IC ++ +  +++       V  D     +LK+A++  AL+      +     ++SGAGHDA  +       MLFV  RGG+SHSP E+
Sbjct:  189 FVELHIEQGKTLEMSGRDLGIVTSIAGQRRYLVTLEGECNHAGTTSMKWRKDPLAASSRIIHELLLRSDELPDELR-------------------LTCGKITAEPNVANVIPGRVQFSIDIRHQHQHVLEQFHQDMVALINGICLQKGIRAVIDEYMRIEPVPMD----ERLKAAAFETALENGFSCEE-----MVSGAGHDAQMIGRRYPACMLFVPSRGGVSHSPKEY 390          
The following BLAST results are available for this feature:
BLAST of CN188100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AAH_ARATH4.760e-11374.34Allantoate deiminase, chloroplastic OS=Arabidopsis... [more]
HYUC_PSESN4.115e-4038.03Hydantoin utilization protein C OS=Pseudomonas sp.... [more]
AMAB2_BACST1.978e-3435.41N-carbamoyl-L-amino acid hydrolase OS=Bacillus ste... [more]
AMAB1_BACST6.363e-3335.02N-carbamoyl-L-amino acid hydrolase OS=Bacillus ste... [more]
ALLC_ECOLI7.051e-2431.43Allantoate amidohydrolase OS=Escherichia coli (str... [more]
Y588_HAEIN2.052e-2329.25Uncharacterized hydrolase HI0588 OS=Haemophilus in... [more]
ALLC_BACSU4.570e-2332.17Allantoate amidohydrolase OS=Bacillus subtilis GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188100 ID=CN188100; Name=CN188100; organism=Citrus sinensis; type=EST; length=855bp
GGCCCCCTTTTTTTGAGAAATATTTACATTAATGCTGCAGAATGTTTACA
GTTCACACATGGGTTTCAAGAAATGCCAAAACTGCTAAACCAGCAGCCCA
TACATCATCATCCAAAACATGCTCTGCAGGGGAATGACTTATTCCTCCCC
GACATCGCACAAAGAGCATCCCGACCTTGGTTAGATGAGACATGGCCATT
GCATCATGTCCGGCACCGCTCATTATTACTGGAATTTCATGTTGAGTCGC
ACCTGTCATTCTCTTGAGTGCAGCGTAGGATGCAGACTTCAGCTGTGAAC
TTAAATCAGCATCGCACATCACTGCATTTGCATCATGCTTTCGTTCAACA
ATGCAAGAAACGGAACGTTTTTCACATATTTGATACAATTGATTAGATAG
TTCGTAAAGAACTGTCTCACGGCCTGCATCATCAATTGCTCGTAAATCCA
CAGTGAATGTAACCTCTCCTGGGATGACATTGCTAGCGCTTGGCCAGCTT
GAAATCTCTCCAACAGTACAGACAAGAGAACTAGATAGTGATTCCAATGT
GGAGCAGTTGGAACGACCATCATAAGACAGAAAATCTTTAGGGTGTTTAC
AGAGTCTTTCCAGAAGTACAATTAATTCAGCAGCAGCAGTCATAGGGTCC
TGACGCATTGACATTGGAACTGTTCCAGCGTGCCCTTGTGAACCTCTCAC
TGTAACCTTTAATCGTGTCTGCCCAGCTATGCCTTGAACCACTCCAAGAG
GAAAACCAACCCATTCCAGTACAGGTCCTTGTTTCATGTGAACCTCAATG
TAACCCCAAACGGATGCTGGATCATACTTGAGTTGTAATAAACTTTCCTC
TGCAA
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