CK939244

Overview
NameCK939244
Unique NameCK939244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939244_ssr299 microsatellite CK939244_ssr299:299..316. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939244_ssr286 microsatellite CK939244_ssr286:286..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2166 contig Csv1_Contig2166:1..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK939244 vs. ExPASy Swiss-Prot
Match: MCATL_RAT (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.541e-11
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:  349 VKLQKHNTEVHGIRYKNGLHCTARILRTEGVRGLYRGATPSFLGMVFESSLLFGIYSQTKQLLQVCKTLN 558
            V+LQ  NTE    +Y+  LHC   I++ E V GLY+G     +G+ F ++L+FG+   T + L     LN
Sbjct:   27 VRLQVQNTEKP--QYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGQDSPLN 94

HSP 2 Score: 39.6614 bits (91), Expect = 3.541e-11
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 3 
Query:  165 EYVAGLIAGVATVIVGHPFDTVKVK 239
            +++AG   GVA VIVGHPFDTVKV+
Sbjct:    4 DFLAGCAGGVAGVIVGHPFDTVKVR 28
The following BLAST results are available for this feature:
BLAST of CK939244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MCATL_RAT3.541e-1137.14Mitochondrial carnitine/acylcarnitine carrier prot... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004432_D07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939244 ID=CK939244; Name=CK939244; organism=Citrus sinensis; type=EST; length=853bp
GGGGAGCGATCTCACGAGTATTGTTTAGTAATGAAGGTCGTTGAACTTGA
ACCGTCCAAAATTGGGAGGGAAAGAGTGAGAGAGACGTGGACACGACAAA
GCAGAGGGTTTTAAATTTCAGGGAAAGTAGAGAGATGGAAGAGAGTTGGG
GTTCCGGTTACAAAGAGTATGTGGCAGGCTTAATCGCTGGTGTTGCTACC
GTCATTGTCGGTCATCCTTTCGACACCGTCAAGGTAAAACACTAAAAACT
AAAAGGGTTGGCTTGTTGTCTTAACAATTGAATTGTTTATTTATTTATTT
ATTATTATTATTATTATGGGTATATCATATGTTTGTTTAATTTATTAGGT
GAAGCTGCAGAAACACAATACTGAAGTGCATGGGATTAGGTACAAGAATG
GTTTGCATTGCACTGCAAGGATACTCAGAACTGAAGGGGTTAGAGGACTC
TACAGAGGAGCAACGCCATCATTCCTTGGGATGGTTTTTGAGAGTTCACT
TCTTTTTGGTATCTATTCCCAAACAAAACAGCTACTGCAGGTTTGTAAGA
CATTGAATTGAACTATCTGTTTGCTGTTTCTACTCGGCACTAAATGATAA
CCACAAATCATTTCCATCAATAATACCGTTGATACTTTTCCTTAAACGCG
TCGTCTACCTATCAAACACTTATGAACTTTTATTTTTTTCCAAAATTAAG
GGAGGGGTACAAAGTGGTGGACCACAACCCAATGTAATAATTCCTTCAGC
AGCTTTTGGTGGATCTATTATCAGTTTTGTGTTATGTCCATCAGAGCTAG
TGAAGGTTAGTGAATTAGAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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