CN188097

Overview
NameCN188097
Unique NameCN188097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC2_PEA (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pisum sativum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 6.009e-106
Identity = 181/189 (95.77%), Postives = 185/189 (97.88%), Query Frame = -3
Query:  177 RKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 743
            +KMLSSETAVIAETGDSWFNCQKLKLP+GCGYEFQMQYGSIGWSVGATLGYAQ+VPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEEL+EAI  ATGPKKD  CFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  217 QKMLSSETAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELVEAIAKATGPKKDSLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 405          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSI (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 5.099e-97
Identity = 166/189 (87.83%), Postives = 175/189 (92.59%), Query Frame = -3
Query:  177 RKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 743
            +KML+S++AVIAETGDSWFNCQKLKLP+GCGYEFQMQYGSIGWSVGA LGYAQ   +KRVIACIGDGSFQVTAQDVSTM+RC Q +IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWT+KV CEEEL EAI  A G KKDC CFIEVI HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  418 QKMLNSDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIRCAQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTSKVKCEEELTEAIGMALGEKKDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 606          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSJ (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. japonica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.484e-96
Identity = 163/189 (86.24%), Postives = 177/189 (93.65%), Query Frame = -3
Query:  177 RKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 743
            ++MLS +TAVIAETGDSWFNCQKL+LP+GCGYEFQMQYGSIGWSVGATLGYAQ+  +KRVI+CIGDGSFQ+TAQDVSTMLRCGQK+IIFLINNGGYTIEVEIHDGPYNVIKNW+YTGL+DAIHN +G CWT KV  EEELIEAI  ATG KKDC CFIE+IVHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  417 KEMLSGDTAVIAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVISCIGDGSFQMTAQDVSTMLRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLIDAIHNSDGNCWTKKVRTEEELIEAIATATGAKKDCLCFIEIIVHKDDTSKELLEWGSRVSAANSRPPNPQ 605          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSI (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.484e-96
Identity = 163/189 (86.24%), Postives = 177/189 (93.65%), Query Frame = -3
Query:  177 RKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 743
            ++MLS +TAVIAETGDSWFNCQKL+LP+GCGYEFQMQYGSIGWSVGATLGYAQ+  +KRVI+CIGDGSFQ+TAQDVSTMLRCGQK+IIFLINNGGYTIEVEIHDGPYNVIKNW+YTGL+DAIHN +G CWT KV  EEELIEAI  ATG KKDC CFIE+IVHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  417 KEMLSGDTAVIAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVISCIGDGSFQMTAQDVSTMLRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLIDAIHNSDGNCWTKKVRTEEELIEAIATATGAKKDCLCFIEIIVHKDDTSKELLEWGSRVSAANSRPPNPQ 605          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSJ (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. japonica GN=PDC2 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.798e-95
Identity = 165/189 (87.30%), Postives = 175/189 (92.59%), Query Frame = -3
Query:  177 RKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 743
            +KML+S++AVIAETGDSWFNCQKLKLP+GCGYEFQMQYGSIGWSVGA LGYAQ   +KRVIACIGDGSFQVTAQDVSTM+RC Q +IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWT+KV CEEEL EAI  A G +KDC CFIEVI HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  418 QKMLNSDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIRCAQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTSKVKCEEELTEAIGMALG-EKDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 605          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC1_MAIZE (Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PDC1 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.063e-94
Identity = 162/187 (86.63%), Postives = 173/187 (92.51%), Query Frame = -3
Query:  177 MLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 737
            MLS ++AV+AETGDSWFNCQKL+LP+GCGYEFQMQYGSIGWSVGATLGYAQ+  +KRVIACIGDGSFQVTAQDVSTMLRCGQK+IIFLINNGGYTIEVEIHDGPYNVIKNW+YTGLV+AIHN EG CWT KV  EE+L EAI   TG KKDC CFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  424 MLSGDSAVVAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQDVSTMLRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNSEGNCWTMKVRTEEQLKEAIATVTGAKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 610          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC2_TOBAC (Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.891e-94
Identity = 169/215 (78.60%), Postives = 175/215 (81.40%), Query Frame = -3
Query:  177 RKMLSSETAVIAETGDSWFNCQKLKLPKGCGY--------------------------EFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 743
            +KMLS ETAVIAETGDSWFNCQKLKLP+GCGY                          EFQMQYGSIGWSVGATLGYAQSVP+KRVI+CIGDGSFQVTAQDVSTM+RC QK IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEG CWT KV  EEEL EAI  ATG KKDC CFIEVIVHKDDTSKELLEWGSRV +AN RPPNPQ
Sbjct:  400 QKMLSDETAVIAETGDSWFNCQKLKLPEGCGYVTNNSLSAWYPFYLQTLEEKSSCCRYEFQMQYGSIGWSVGATLGYAQSVPKKRVISCIGDGSFQVTAQDVSTMIRCEQKNIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGNCWTMKVRTEEELTEAIATATGEKKDCLCFIEVIVHKDDTSKELLEWGSRVCSANGRPPNPQ 614          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC1_PEA (Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.437e-91
Identity = 154/187 (82.35%), Postives = 170/187 (90.91%), Query Frame = -3
Query:  177 MLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 737
            ++S +TAVIAETGDSWFNCQKL+LP+ CGYEFQMQYGSIGWSVGATLGYAQ+  +KRVIACIGDGSFQVTAQD+STM+RCGQ++IIFLINNGGYTIEVEIHDGPYNVIKNW+YTG V AIHNG+GKCWT KV  EE+L EAI  ATG +KD  CFIEV  HKDDTSKELLEWGSRV+AANSRPPNPQ
Sbjct:  407 LISGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAATDKRVIACIGDGSFQVTAQDISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGFVSAIHNGQGKCWTAKVRTEEDLTEAIATATGAEKDSLCFIEVFAHKDDTSKELLEWGSRVAAANSRPPNPQ 593          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSJ (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. japonica GN=PDC3 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.345e-89
Identity = 154/181 (85.08%), Postives = 167/181 (92.27%), Query Frame = -3
Query:  177 AVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 719
            AV+AETGDSWFNCQKL+LP+GCGYEFQMQYGSIGWSVGA LGYAQ+V +KRV+ACIGDGSFQVTAQDVSTMLRCGQ++IIFLINNGGYTIEVEIHDGPYNVIKNW+Y GLV+AIHNGEG+CW T+V CEEEL  AI  ATG K D  CFIEV+ HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  408 AVMAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGALLGYAQAV-QKRVVACIGDGSFQVTAQDVSTMLRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYVGLVNAIHNGEGRCWATRVRCEEELEAAIATATGDKADSLCFIEVVAHKDDTSKELLEWGSRVSAANSRPPNPQ 587          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSI (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. indica GN=PDC3 PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.345e-89
Identity = 154/181 (85.08%), Postives = 167/181 (92.27%), Query Frame = -3
Query:  177 AVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 719
            AV+AETGDSWFNCQKL+LP+GCGYEFQMQYGSIGWSVGA LGYAQ+V +KRV+ACIGDGSFQVTAQDVSTMLRCGQ++IIFLINNGGYTIEVEIHDGPYNVIKNW+Y GLV+AIHNGEG+CW T+V CEEEL  AI  ATG K D  CFIEV+ HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  408 AVMAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGALLGYAQAV-QKRVVACIGDGSFQVTAQDVSTMLRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYVGLVNAIHNGEGRCWATRVRCEEELEAAIATATGDKADSLCFIEVVAHKDDTSKELLEWGSRVSAANSRPPNPQ 587          
The following BLAST results are available for this feature:
BLAST of CN188097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PDC2_PEA6.009e-10695.77Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pis... [more]
PDC2_ORYSI5.099e-9787.83Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC1_ORYSJ1.484e-9686.24Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_ORYSI1.484e-9686.24Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC2_ORYSJ2.798e-9587.30Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC1_MAIZE1.063e-9486.63Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PD... [more]
PDC2_TOBAC6.891e-9478.60Pyruvate decarboxylase isozyme 2 OS=Nicotiana taba... [more]
PDC1_PEA1.437e-9182.35Pyruvate decarboxylase isozyme 1 OS=Pisum sativum ... [more]
PDC3_ORYSJ1.345e-8985.08Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC3_ORYSI1.345e-8985.08Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005H23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188097 ID=CN188097; Name=CN188097; organism=Citrus sinensis; type=EST; length=754bp
AGCAGCAAGAGGATTTAGTAGATATTAAATTTTAAAATGAATTTCCTTTA
GAAACCAGCAAATAGTTCAAAATACCCAAAACTTACTAAAGTAACCACAG
AAAAGACATGCGCTCATTTAATTTGGCTATAAATGGTAGTAGAGTGCAAT
TTGCAGTATGAGCCGCCTCATATCTACTGAGGATTTGGTGGGCGGCTATT
CGCAGCGGAGACCCTGGAGCCCCATTCCAAAAGCTCTTTGCTTGTATCAT
CCTTGTGAACAATTACTTCAATGAAGCAAAAGCAATCCTTCTTGGGTCCA
GTAGCGTTCTCAATGGCTTCGATGAGCTCCTCCTCGCAGAAGACCTTGGT
TGTCCAGCACTTGCCTTCGCCATTGTGGATTGCATCAACCAACCCGGTGT
AGTTCCAGTTCTTGATCACATTGTAAGGTCCATCATGGATCTCAACTTCA
ATGGTGTAACCACCATTGTTAATTAGGAAGATTATAGTCTTCTGCCCACA
TCGCAGCATTGTTGACACATCTTGTGCAGTTACCTGGAAGCTACCATCAC
CGATGCAAGCAATTACACGCTTCTCTGGCACAGACTGTGCATATCCAAGA
GTAGCACCAACAGACCAACCAATTGATCCATATTGCATTTGGAACTCATA
CCCGCATCCCTTAGGCAATTTCAGTTTCTGGCAGTTAAACCAAGAGTCCC
CTGTCTCAGCAATCACAGCAGTTTCACTAGACAGCATCTTTCTGTATATG
TTGG
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