CN188055

Overview
NameCN188055
Unique NameCN188055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188055_ssr5 microsatellite CN188055_ssr5:5..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 82/129 (63.57%), Postives = 103/129 (79.84%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQ-AVNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS*KE 474
            KV  F+EV+KHN   DCWL+ISGKVY+VTPF++DHPGGDE+LL++T KDAT+DFEDVGHSD+AR+MM+KY IGEIDSSSVPA R Y  PQQ A N  +      +ILQ LVP+LILG+A   R+++ K+
Sbjct:    6 KVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTKKD 134          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 81/129 (62.79%), Postives = 102/129 (79.07%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPP-QQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS*KE 474
            KV  F+EV++HN   DCWL+ISGKVY+VTPF++DHPGGDE+LL++T KDAT+DFEDVGHSD+AR+MMEKY+IGEIDSS+VPA R Y  P Q A N  +      +ILQ LVP+LILG+A   R ++ KE
Sbjct:    6 KVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTKKE 134          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40
Identity = 75/126 (59.52%), Postives = 100/126 (79.37%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQA-VNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS 465
            KV    EV++HNN  DCWLVISGKVY+VT FL+DHPGGDE+LL+AT KDATDDFEDVGHS SAR M+++Y++G+IDS+++P K KYTPP Q   N  + +    ++LQ LVP++ILG+AF  R+++
Sbjct:    6 KVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYT 131          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 75/127 (59.06%), Postives = 99/127 (77.95%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQA-VNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS 465
            +KV    EV+ HNN  DCWL+ISGKVYNVT FLEDHPGG E+LL+AT KDATDDFED+GHS SAR M+++Y++G+IDSS++P K KYTPP+Q   N  + T    ++LQ LVP++ILG+AF   +++
Sbjct:    5 SKVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYT 131          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.804e-40
Identity = 75/129 (58.14%), Postives = 102/129 (79.07%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQA-VNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS*KE 474
            KV+  +EVAKHN++DDCWL+I GKVYNV+ FLEDHPGGD++LL++T KDATDDFEDVGHS +AR MM++Y++G+ID+S++PA+ KY PP+Q   N  +      +ILQ LVP+ ILG+A A R ++  E
Sbjct:    7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKSE 135          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 72/128 (56.25%), Postives = 102/128 (79.69%), Query Frame = 1
Query:   85 MAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGS-AAQILQLLVPMLILGIAFAFRYFS 465
            M K+    EVA+HNN  DCWL+I+GKVY+VT FLEDHPGGD++LL+AT KDATDDFED+GHS SA+ M+++Y++G+IDSSS+P++ KYTPP+Q + +P+ T     ++LQ LVP++IL  A   R+++
Sbjct:    1 MGKIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYT 128          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 74/127 (58.27%), Postives = 99/127 (77.95%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQA-VNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS 465
            AK+    EV++HN   DCW+VI+GKVYNVT FLEDHPGGD++LL++T KDATDDFEDVGHS+SAREMME+Y++GEID +++P K KYTPP+Q   N  + +    ++LQ LVP+ ILG+A   R ++
Sbjct:    5 AKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYT 131          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.718e-35
Identity = 67/126 (53.17%), Postives = 97/126 (76.98%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGS-AAQILQLLVPMLILGIAFAFRYF 462
            +KV+   EV++H+  +DCWLVI GKVY+VT FL+DHPGG ++LL++T KDATDDFED+GHS SAR MM++  +G+IDSS++P K  YTPP+Q + + + T     ++LQ LVP++ILG+A   R++
Sbjct:    4 SKVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFY 129          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 50/124 (40.32%), Postives = 77/124 (62.10%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRY 459
            AK+    EV+KH  + D W+VI  KVY++T F+ +HPGG+E+L+    KDAT+ FED+GHSD AREM+E+Y IG +D +S   +      +      E  GS+   L++++P L +  A  ++Y
Sbjct:    3 AKIFSLDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHSDEAREMLEEYLIGSLDEASRTKEYNVNVIRAGELPEEKKGSS---LRIILPALAIIGALVYKY 123          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  109 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGE-IDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYF 462
            EVAKHN   D WL+I   +Y+VT FL +HPGG+E+L+    KDAT++FEDVGHS+ AR+MM+KY IGE ++S      +K  P      S E     + +   LVP+++  +A  F  F
Sbjct:   13 EVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVESERTSVAQKSEPTW----STEQQTEESSVKSWLVPLVLCLVATLFYKF 127          
The following BLAST results are available for this feature:
BLAST of CN188055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CYB51_ARATH9.407e-4263.57Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB7.963e-4162.79Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_TOBAC2.317e-4059.52Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC3.952e-4059.06Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_ORYSJ8.804e-4058.14Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5_BOROF3.346e-3956.25Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB52_ARATH5.707e-3958.27Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_CUSRE1.718e-3553.17Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB5_RHIST5.366e-2140.32Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_DROME5.366e-2143.70Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188055 ID=CN188055; Name=CN188055; organism=Citrus sinensis; type=EST; length=707bp
GAGGGTCTGTCTGTCTGTCTGTCCGTCTGCAAGCTCCTATTATTCCGATT
CTGCGTGAGCAGTACCTGAAATAGCCCGAAAAGAATGGCCAAGGTTCATG
ATTTTCAAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTA
ATTTCTGGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGG
GGGTGATGAACTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACT
TTGAAGATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATAC
CACATTGGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACAC
TCCACCCCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAC
AGATTCTACAGCTCCTGGTACCAATGTTGATCCTGGGCATAGCATTTGCT
TTCCGTTACTTTTCCTAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAA
ACCGAACCAGATACCTCTTCGTTAGATTACTACCTATCCTATAGTATTAG
AACTTCAATTGGCACTTGGTATCACGATTTGATTAGATACTAATCTATGT
GTAGCAATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGATAG
AAGTTATACTGAAGCACTAATACAGTGAAATTGAACGCAAGAAAAAAAAA
AAAAAAA
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