CN188053

Overview
NameCN188053
Unique NameCN188053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:346..1033. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188053 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 371.703 bits (953), Expect = 2.007e-102
Identity = 181/206 (87.86%), Postives = 199/206 (96.60%), Query Frame = 3 
Query:   69 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEV 686
            TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEV
Sbjct:   78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEV 283
[Close]
BLAST of CN188053 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 2.904e-93
Identity = 167/206 (81.07%), Postives = 185/206 (89.81%), Query Frame = 3 
Query:   69 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEV 686
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AGVK IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEV
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEV 211
The following BLAST results are available for this feature:
BLAST of CN188053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2766_ARATH2.007e-10287.86Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH2.904e-9381.07Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188053 ID=CN188053; Name=CN188053; organism=Citrus sinensis; type=EST; length=688bp
GAGCGAGATACCGAAGGAGTTGCGTCAGTAAAACCGAAGCAGTCAAAGTT
TTATCGATGGCTAAGAGTACCGTTCTTGTCACCGGCGCTGGTGGTCGAAC
CGGTCAAATAGTTTATAAGAAATTAAAGGAGAGGTCAGAGCAATATGCTG
CTAGAGGTTTGGTCAGAACTGAGGAGAGCAAGCAGAAAATTGGCGGAGCA
GATGATCTTTTTATTGGTGACATAAGGGACTCTAATAGCATCATTCCTGC
AATCCAAGGAATCGATGCTCTCATAATTCTCACAAGTGCAGTACCAAAGA
TGAAACCTGATTTTGATCCTGCCAAAGGTGGAAGGCCTGAGTTCTACTTT
GAAGAGGGTGCATATCCTGAACAGGTTGATTGGATTGGTCAGAAAAATCA
AATTGATGCTGCTAAGGCTGCTGGAGTGAAGCAAATTGTGTTGGTTGGAT
CGATGGGAGGAACAAATCTTAATCATCCCTTGAACAGTTTGGGCAATGGC
AATATATTGGTTTGGAAAAGAAAGGCTGAGCAGTATTTGGCTGACTCTGG
TATTCCATACACAATTATAAGGGCCGGAGGCCTTCAGGATAAAGAAGGTG
GTATCCGAGAATTGCTTGTCGGTAAGGATGATGAACTTCTTCAGACAGAA
ACAAGGACAATTGCCAGGGCCGATGTTGCCGAAGTCTG
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