CN188051

Overview
NameCN188051
Unique NameCN188051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig797 contig Csv1_Contig797:379..1142. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188051 vs. ExPASy Swiss-Prot
Match: RMP_DICDI (RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.252e-23
Identity = 64/193 (33.16%), Postives = 107/193 (55.44%), Query Frame = 1
Query:   76 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFDTTASEAA-----EGLVEIREEYGEENLSERASESGLLKQDSSRLS--------------EADNLKDEDEEYARIMSR 597
            Q+  K+ +  ++E Q  +E +K   +D   LI+ +Q LP+ L   IMVP GK AFF G L +TNE ++LLG+ Y+A+R+SKQT++I++RR K +D+ ++ L+  +K L+   S   T  S+A      + +VEI+EEY  +   E+  +     Q S+  +              E    K+ DEE+ +++ R
Sbjct:    4 QEIFKKYEQKVVEYQDHIEELKSTKNDYKQLIDTLQHLPDTLQPKIMVPMGKLAFFEGNLKNTNEILILLGDNYFAKRSSKQTIDIIQRRDKDIDTSINDLREQIKGLKQRVS-MTTDLSKALHEKEYDNIVEIKEEYNSDEEREKEKKRKQKPQKSTTTTTTTTTSKDKPKTEEEKKKSKEMDEEFDKMLKR 195          
BLAST of CN188051 vs. ExPASy Swiss-Prot
Match: RMP_BOVIN (Unconventional prefoldin RPB5 interactor OS=Bos taurus GN=RMP PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.670e-18
Identity = 59/195 (30.26%), Postives = 104/195 (53.33%), Query Frame = 1
Query:   10 MEEPTAKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEAD---NLKDED 570
            ME P       S ++     +V +  +  +  +   Q++++  K+  +D   L   +  LP++L + IMVPFG  AF PG+L+HTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D LK +MK+ ++   F +     S+AA  +V+IREE     E     R +     K  +S + EA+   +LK +D
Sbjct:    1 MEAPPDPRPHASAAAPLRAPEVARLREEQEKVVTNCQEKIQHWKKVDNDYNALQERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKTDFEFKAKHRIAHKPHSKPKTSDIFEAEFANDLKSKD 195          
BLAST of CN188051 vs. ExPASy Swiss-Prot
Match: RMP_HUMAN (Unconventional prefoldin RPB5 interactor OS=Homo sapiens GN=RMP PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.181e-18
Identity = 55/170 (32.35%), Postives = 93/170 (54.71%), Query Frame = 1
Query:   70 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEADNLKD 564
            DV +  +  +  +   Q+ ++  K+  +D   L   +  LP++L + IMVPFG  AF PG+L+HTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D LK +MK+ ++   F +     S+AA  +V+IREE     E     R +     K  +S + EAD   D
Sbjct:   29 DVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIAND 198          
BLAST of CN188051 vs. ExPASy Swiss-Prot
Match: RMP_MOUSE (Unconventional prefoldin RPB5 interactor OS=Mus musculus GN=Rmp PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.846e-17
Identity = 56/195 (28.72%), Postives = 105/195 (53.85%), Query Frame = 1
Query:   43 SLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEAD--------NLKDEDEEYARI 588
            S ++     +V +  +  +  +   Q++++  ++  +D + L   ++ LP++L + +MVPFG  AF PG+L+HTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D  K ++K+ ++   F +     S+AA   V+IREE     E    +R +     K  +S + EAD        N  D DE +AR+
Sbjct:   18 SAAAPLRAPEVARLREEQEKVVTNCQEKIQHWEKVDNDYSALQERLRTLPDKLSYDVMVPFGPLAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDFKKVLKNFESRVEFTEDLQKMSDAAGDFVDIREEIKSDFEFKGKQRIAHKPHSKPKTSDIFEADFENGVKPKNTFDADELWARL 212          
The following BLAST results are available for this feature:
BLAST of CN188051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RMP_DICDI2.252e-2333.16RNA polymerase II subunit 5-mediating protein homo... [more]
RMP_BOVIN1.670e-1830.26Unconventional prefoldin RPB5 interactor OS=Bos ta... [more]
RMP_HUMAN2.181e-1832.35Unconventional prefoldin RPB5 interactor OS=Homo s... [more]
RMP_MOUSE1.846e-1728.72Unconventional prefoldin RPB5 interactor OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188051 ID=CN188051; Name=CN188051; organism=Citrus sinensis; type=EST; length=764bp
GAGGCAGCAATGGAAGAGCCAACAGCGAAAGGAACAGTGACTTCGCTCTC
GTCGATGTTTTCAGTCGACGACGTGCAGAAAGCAGCTAAGCGCGTGCAGG
ATGCGCTGTTGGAGAAGCAGCAGGAGCTTGAGCGAGTTAAGGAATTCATC
AGCGATAACACAAACCTCATTAACCTCGTCCAGAAACTTCCCGAAGAACT
TCACCACGGTATCATGGTTCCTTTTGGAAAAGCAGCATTTTTTCCTGGGC
GTTTGATACATACCAATGAGTTTATGGTTCTTTTGGGAGAAGGGTATTAT
GCAGAGAGAACATCCAAGCAAACTGTTGAGATTTTGAAGAGGAGGGGGAA
GGTCTTGGATTCCCAGGTTGATTCTCTCAAAGCCATGATGAAGGATCTTC
AAGCCGAGGCTTCATTTTTTGATACTACAGCTTCTGAAGCAGCAGAGGGT
CTTGTAGAGATAAGGGAAGAATATGGGGAGGAAAATTTGTCTGAAAGGGC
ATCTGAATCAGGTCTGTTGAAACAAGATTCTTCTCGGCTTTCTGAAGCTG
ACAACCTGAAAGATGAAGATGAAGAATATGCCCGTATTATGTCCAGGTTG
GATGAACTTGAGAAAGAAGAACTTGCTTGGGAAATTGAAAATGGAAGTGC
TGAAAGTAAGCAAAATAATGTGGCTAAAAGTGACAATGCAAAATATGGAG
ACGAAGATAATGAACTTGAGGAGGCAGAACTTGCTGCTGAAACTGAAAAT
AGGAGTGATGGAAA
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