CN188051
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188051 vs. ExPASy Swiss-Prot
Match: RMP_DICDI (RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.252e-23 Identity = 64/193 (33.16%), Postives = 107/193 (55.44%), Query Frame = 1 Query: 76 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFDTTASEAA-----EGLVEIREEYGEENLSERASESGLLKQDSSRLS--------------EADNLKDEDEEYARIMSR 597 Q+ K+ + ++E Q +E +K +D LI+ +Q LP+ L IMVP GK AFF G L +TNE ++LLG+ Y+A+R+SKQT++I++RR K +D+ ++ L+ +K L+ S T S+A + +VEI+EEY + E+ + Q S+ + E K+ DEE+ +++ R Sbjct: 4 QEIFKKYEQKVVEYQDHIEELKSTKNDYKQLIDTLQHLPDTLQPKIMVPMGKLAFFEGNLKNTNEILILLGDNYFAKRSSKQTIDIIQRRDKDIDTSINDLREQIKGLKQRVS-MTTDLSKALHEKEYDNIVEIKEEYNSDEEREKEKKRKQKPQKSTTTTTTTTTSKDKPKTEEEKKKSKEMDEEFDKMLKR 195
BLAST of CN188051 vs. ExPASy Swiss-Prot
Match: RMP_BOVIN (Unconventional prefoldin RPB5 interactor OS=Bos taurus GN=RMP PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.670e-18 Identity = 59/195 (30.26%), Postives = 104/195 (53.33%), Query Frame = 1 Query: 10 MEEPTAKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEAD---NLKDED 570 ME P S ++ +V + + + + Q++++ K+ +D L + LP++L + IMVPFG AF PG+L+HTNE VLLG+ ++A+ ++KQ V +++ R + + +D LK +MK+ ++ F + S+AA +V+IREE E R + K +S + EA+ +LK +D Sbjct: 1 MEAPPDPRPHASAAAPLRAPEVARLREEQEKVVTNCQEKIQHWKKVDNDYNALQERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKTDFEFKAKHRIAHKPHSKPKTSDIFEAEFANDLKSKD 195
BLAST of CN188051 vs. ExPASy Swiss-Prot
Match: RMP_HUMAN (Unconventional prefoldin RPB5 interactor OS=Homo sapiens GN=RMP PE=1 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 2.181e-18 Identity = 55/170 (32.35%), Postives = 93/170 (54.71%), Query Frame = 1 Query: 70 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEADNLKD 564 DV + + + + Q+ ++ K+ +D L + LP++L + IMVPFG AF PG+L+HTNE VLLG+ ++A+ ++KQ V +++ R + + +D LK +MK+ ++ F + S+AA +V+IREE E R + K +S + EAD D Sbjct: 29 DVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIAND 198
BLAST of CN188051 vs. ExPASy Swiss-Prot
Match: RMP_MOUSE (Unconventional prefoldin RPB5 interactor OS=Mus musculus GN=Rmp PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.846e-17 Identity = 56/195 (28.72%), Postives = 105/195 (53.85%), Query Frame = 1 Query: 43 SLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEAD--------NLKDEDEEYARI 588 S ++ +V + + + + Q++++ ++ +D + L ++ LP++L + +MVPFG AF PG+L+HTNE VLLG+ ++A+ ++KQ V +++ R + + +D K ++K+ ++ F + S+AA V+IREE E +R + K +S + EAD N D DE +AR+ Sbjct: 18 SAAAPLRAPEVARLREEQEKVVTNCQEKIQHWEKVDNDYSALQERLRTLPDKLSYDVMVPFGPLAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDFKKVLKNFESRVEFTEDLQKMSDAAGDFVDIREEIKSDFEFKGKQRIAHKPHSKPKTSDIFEADFENGVKPKNTFDADELWARL 212 The following BLAST results are available for this feature:
BLAST of CN188051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188051 ID=CN188051; Name=CN188051; organism=Citrus sinensis; type=EST; length=764bpback to top |