CN188042

Overview
NameCN188042
Unique NameCN188042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1453 contig Csv1_Contig1453:1312..2116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188042 vs. ExPASy Swiss-Prot
Match: KPC1_LYTPI (Protein kinase C OS=Lytechinus pictus GN=PKC1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 54/170 (31.76%), Postives = 84/170 (49.41%), Query Frame = -3
Query:  305 EKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL-------------EGEYTDCFELDGTKS-GKLKLHLKWMPQP 757
            ++  KS  N   A   E+    K +  +I   L VTV  A+NL   D  G +DP+V L +   +K ET+ KTR +   LNP W ++FDF +ED   +  L+ EVWD D   + D+MG     ++ ++              EGEY +   +  T+S  +L  ++K +P P
Sbjct:  132 KRCQKSVPNLCGADHTERRGRIKVKAEVIGNKLQVTVAEAKNLIPMDPNGLSDPFVKLKLIPDQKRETKKKTRTIKGSLNPTWGESFDFNLEDTDRNRRLLVEVWDWDRATRNDFMGALSFGISELMKAGVDAWYKLLGQEEGEYYNVPAIAETESIDELTSNIKKLPMP 301          
BLAST of CN188042 vs. ExPASy Swiss-Prot
Match: ESYT1_PONAB (Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = -3
Query:  305 VLSVTVILAENLPASD------LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM-PQP 664
            VL + V+ A++L A D      + GK+DPYV L +     R+   VV + LNP WN+ F+ +V       L  EV+D D    D++GRC ++LT V+  G   +   L+   SG+L L L+ + P+P
Sbjct:  648 VLRIHVLEAQDLIAKDRFLGGLVKGKSDPYVKLKLAGRSFRS--HVVREDLNPRWNEVFEVIVTSVPGQELEVEVFDKDLDKDDFLGRCKVSLTTVLNSGFLDEWLTLEDVPSGRLHLRLERLTPRP 772          
BLAST of CN188042 vs. ExPASy Swiss-Prot
Match: ESYT1_HUMAN (Extended synaptotagmin-1 OS=Homo sapiens GN=ESYT1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = -3
Query:  305 VLSVTVILAENLPASD------LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM-PQP 664
            VL + V+ A++L A D      + GK+DPYV L +     R+   VV + LNP WN+ F+ +V       L  EV+D D    D++GRC + LT V+  G   +   L+   SG+L L L+ + P+P
Sbjct:  648 VLRIHVLEAQDLIAKDRFLGGLVKGKSDPYVKLKLAGRSFRS--HVVREDLNPRWNEVFEVIVTSVPGQELEVEVFDKDLDKDDFLGRCKVRLTTVLNSGFLDEWLTLEDVPSGRLHLRLERLTPRP 772          
BLAST of CN188042 vs. ExPASy Swiss-Prot
Match: ESYT3_HUMAN (Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = -3
Query:  314 GVLSVTVILAENLPASD----LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM 667
            GV+ V ++ AE L   D    L GK+DPY  +++     R++T   N  LNP WN+ F+F+V +     L  +++D DT   D++G   + L  V+      + F L+ T SG+L L L+W+
Sbjct:  306 GVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIGLQHFRSRTIYRN--LNPTWNEVFEFMVYEVPGQDLEVDLYDEDTDRDDFLGSLQICLGDVMTNRVVDEWFVLNDTTSGRLHLRLEWL 425          
The following BLAST results are available for this feature:
BLAST of CN188042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
KPC1_LYTPI2.138e-1131.76Protein kinase C OS=Lytechinus pictus GN=PKC1 PE=2... [more]
ESYT1_PONAB3.646e-1135.43Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 ... [more]
ESYT1_HUMAN6.220e-1135.43Extended synaptotagmin-1 OS=Homo sapiens GN=ESYT1 ... [more]
ESYT3_HUMAN8.123e-1133.61Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188042 ID=CN188042; Name=CN188042; organism=Citrus sinensis; type=EST; length=804bp
TTTTTTTTTTTTTTTTTGTAACAATATTTGCAAGCTACATTGACATATAT
GGAGAAATGCCACGTTACATATTACAACCACCTTTGAAAATGATTTGCAT
CTGCTTCACAGATTTTATTCTATAAACCGTACATCAGACGCAGAGCATCA
GATAAAAACCTCACAAATATCTGTTCCTCTCTTTTCCCTAAAGAATTATC
TATATGCTTGAACAACCGTGTGATAGCTTGGGAATCTTCTGTTGGCTACA
AAATCATGTAGTATTTCAGATTGCGTTGGTTTTCACTCAGGTATCGCGAT
AAATAGGCTGCGGCATCCACTTGAGGTGCAACTTTAATTTTCCTGATTTA
GTTCCATCAAGCTCAAAGCAGTCTGTGTATTCTCCTTCCAATATAACCCT
TGTCAATGTCAAGATGCATCGTCCCATGTAGTCCTTCCCAAATGTGTCAT
GATCCCATACTTCAGCAATTAGCATGTCATGCAATCCATCCTCAACAACA
AAGTCAAAAGTTTGATTCCAAATTGGATTCAGGCAGTCATTCACAACTCT
AGTTTTGTTTCTTGTCTCTGATTTCTTCATAGTGAGCACCACATAGGGAT
CAGCCTTCCCCATCAAATCTGATGCAGGCAAGTTTTCAGCTAATATTACT
GTAACAGAAAGTACTCCTCTAATAATAACCTCTCTTCTCTTCTGAGAAGC
ATCTTTTTCAAGTTCAATAGCTTCTGTTCCATTTGCCCCACTTTTAAGAG
CCTTCTCCCCATTTGTAAGAACCTTCTCCAAGGAGGTCATTGAAAAATTG
GGAG
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