CK939111

Overview
NameCK939111
Unique NameCK939111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939111_ssr220 microsatellite CK939111_ssr220:220..231. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2156 contig Csv1_Contig2156:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 7.484e-83
Identity = 158/232 (68.10%), Postives = 173/232 (74.57%), Query Frame = 3
Query:   69 APKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            A K      SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH               FYPADDVKKPL NKRK KPTKLRASITPGTVLI+LAGRF GKRVVFLKQL+SGLLL TGPFKVNGVPLRRVNQ+YVIATSTKVDISGV++ KFDD+YF                        VLP +KKDDQK VD  L+K+IE V +LK YL ARFSLK+GMKPHELVF
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.178e-82
Identity = 158/233 (67.81%), Postives = 172/233 (73.82%), Query Frame = 3
Query:   66 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KPTKLRASITPGTVLI+LAGRF GKRVVFLKQL SGLLL TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF                         +P  KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.844e-82
Identity = 157/233 (67.38%), Postives = 171/233 (73.39%), Query Frame = 3
Query:   66 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KP KLRASITPGTVLI+LAGRF GKRVVFLKQL SGLLL TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF                         +P  KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.411e-81
Identity = 153/227 (67.40%), Postives = 172/227 (75.77%), Query Frame = 3
Query:   84 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+RK KPTKL+ASITPGTVLI+LAGRF GKRVVFLKQL+SGLLL TGPFK+NGVPLRRVNQ+YVI TSTK+DISGV+  KFDD+YF                         +P +KK+DQKTVDA LIKSIEAV +LK YL ARFSL  GMKPHELVF
Sbjct:    7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 3.889e-39
Identity = 108/264 (40.91%), Postives = 137/264 (51.89%), Query Frame = 3
Query:   72 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            PK A    SRNP L+RG+G++SRS MY ++ L+  K                            KNGG                    +YP +DV + L +  K KP      +LR+SITPGTVLI+L GR  GKRVVFLKQL SGLLL TGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                        +  + +K DQK VD Q++  I+AV  L+ YL ++FSL +GM PH+LVF
Sbjct:   44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.299e-38
Identity = 104/274 (37.96%), Postives = 139/274 (50.73%), Query Frame = 3
Query:   39 RVAESGFNEMAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            +V +       PK      SRNP L+RG+G++SRS MY ++ ++  K                           KNGG                    +YP +DV + L +  K KP      KLRASITPGT+LI+L GR  GKRVVFLKQL SGLLL TGP  +N VPLRR +Q +VIATSTK+DIS V + K   D YF                        +  + +K DQK VD+Q++  I+A+  L+ YL + F+L +G+ PH+LVF
Sbjct:   26 KVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-TEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.299e-38
Identity = 108/269 (40.15%), Postives = 140/269 (52.04%), Query Frame = 3
Query:   60 NEMAPKAATGRT--SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            N  A K+  G+   SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L +  K KP      KLRASITPGTVLI+L GR  GKRVVFLKQL SGLLL TGP  +N VPLRR +Q +VIATSTK+DIS V + K   D YF                        +  + +K DQK VD+Q++  I+AV  L+ YL + F+L +G+ PH+LVF
Sbjct:   31 NVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.615e-38
Identity = 102/255 (40.00%), Postives = 137/255 (53.73%), Query Frame = 3
Query:   96 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L +  K KP      KLRASITPGT+LI+L GR  GKRV+FLKQL+SGLLL TGP  +N VPLRR +Q +VIATSTK+DISGV + +   D YF                        +  + +K DQK VD+Q+++ I+AV  L+ YL + F+L +G+ PH+LVF
Sbjct:   41 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 105/256 (41.02%), Postives = 135/256 (52.73%), Query Frame = 3
Query:   96 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            SRNP L+RG+G++SRS MY ++ L+  K                            KNGG                    +YP +DV + L +  K KP      +LR+SITPGTVLI+L GR  GKRVVFLKQL SGLLL TGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                        +  + +K DQK VD+Q++  I+AV  L+ YL ++FSL +GM PH+LVF
Sbjct:   54 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 2.134e-37
Identity = 102/255 (40.00%), Postives = 136/255 (53.33%), Query Frame = 3
Query:   96 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L +  K KP      KLRASITPGT+LI+L GR  GKRVVFLKQL SGLLL TGP  +N VPLRR +Q +VIATSTK+DISGV + +   D YF                        +  + +K DQK VD+Q+++ I+AV  L+ YL + F+L +G+ PH++VF
Sbjct:   44 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEI-TEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287          
The following BLAST results are available for this feature:
BLAST of CK939111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR7.484e-8368.1060S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH2.178e-8267.8160S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH2.844e-8267.3860S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL61_ARATH1.411e-8167.4060S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL6_MOUSE3.889e-3940.9160S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_HUMAN4.299e-3837.9660S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
RL6_CHILA4.299e-3840.1560S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_PIG5.615e-3840.0060S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_RAT9.578e-3841.0260S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_BOVIN2.134e-3740.0060S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004434_A06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939111 ID=CK939111; Name=CK939111; organism=Citrus sinensis; type=EST; length=778bp
GGGGGCGCCACTTTCTTTCAAACACTTTTCACCAACAGCGAGTAGCAGAG
AGCGGCTTCAACGAAATGGCGCCGAAAGCTGCGACTGGAAGAACGAGCCG
TAACCCGGACCTCATACGCGGCGTTGGCAAGTTCTCCAGATCCAAAATGT
ACCACAAGCGCGGCCTCTGGGCAATCAAGGCAAAAAACGGCGGCGTTTTC
CCGAAACACGACCCAAAGCCTGCTGCTGCTGAGACGCCAGCCAAGCCTCC
CAAGTTCTACCCAGCTGATGATGTCAAGAAGCCGCTCGCCAACAAGCGAA
AGCACAAACCCACCAAACTCAGAGCGAGTATTACACCTGGGACAGTGTTG
ATTCTATTGGCTGGAAGGTTTATGGGGAAGAGAGTTGTTTTTCTGAAACA
ACTTACATCTGGGTTGCTTCTTGCTACCGGGCCGTTCAAGGTCAACGGTG
TTCCATTGAGACGGGTAAATCAATCTTATGTGATTGCTACCTCTACCAAG
GTTGACATTTCTGGAGTCGATCTAGGAAAGTTTGATGACCAATACTTTGA
AAAGGAAGCCGAGAAGAAGAAAAAGAAGGGGGAAGGAGAATTTTTTGAGG
CAGAGAAGGAGGAAAAGAAGGTGCTCCCAGATGATAAGAAAGATGATCAA
AAGACTGTTGATGCGCAATTGATAAAATCCATTGAAGCAGTGCTAGACTT
GAAGACCTACTTGTCAGCGAGGTTTTCTCTCAAGTCAGGCATGAAACCTC
ATGAGCTTGTCTTTTAGAGGAGTTGTCC
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