CK939111
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 306.99 bits (785), Expect = 7.484e-83 Identity = 158/232 (68.10%), Postives = 173/232 (74.57%), Query Frame = 3 Query: 69 APKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 A K SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH FYPADDVKKPL NKRK KPTKLRASITPGTVLI+LAGRF GKRVVFLKQL+SGLLL TGPFKVNGVPLRRVNQ+YVIATSTKVDISGV++ KFDD+YF VLP +KKDDQK VD L+K+IE V +LK YL ARFSLK+GMKPHELVF Sbjct: 3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 2.178e-82 Identity = 158/233 (67.81%), Postives = 172/233 (73.82%), Query Frame = 3 Query: 66 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPL N+R KPTKLRASITPGTVLI+LAGRF GKRVVFLKQL SGLLL TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF +P KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 305.064 bits (780), Expect = 2.844e-82 Identity = 157/233 (67.38%), Postives = 171/233 (73.39%), Query Frame = 3 Query: 66 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPL N+R KP KLRASITPGTVLI+LAGRF GKRVVFLKQL SGLLL TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF +P KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 1.411e-81 Identity = 153/227 (67.40%), Postives = 172/227 (75.77%), Query Frame = 3 Query: 84 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPL N+RK KPTKL+ASITPGTVLI+LAGRF GKRVVFLKQL+SGLLL TGPFK+NGVPLRRVNQ+YVI TSTK+DISGV+ KFDD+YF +P +KK+DQKTVDA LIKSIEAV +LK YL ARFSL GMKPHELVF Sbjct: 7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 161.77 bits (408), Expect = 3.889e-39 Identity = 108/264 (40.91%), Postives = 137/264 (51.89%), Query Frame = 3 Query: 72 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 PK A SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L + K KP +LR+SITPGTVLI+L GR GKRVVFLKQL SGLLL TGP +N VPLRR +Q +VIATSTKVDIS V + K D YF + + +K DQK VD Q++ I+AV L+ YL ++FSL +GM PH+LVF Sbjct: 44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3) HSP 1 Score: 158.303 bits (399), Expect = 4.299e-38 Identity = 104/274 (37.96%), Postives = 139/274 (50.73%), Query Frame = 3 Query: 39 RVAESGFNEMAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 +V + PK SRNP L+RG+G++SRS MY ++ ++ K KNGG +YP +DV + L + K KP KLRASITPGT+LI+L GR GKRVVFLKQL SGLLL TGP +N VPLRR +Q +VIATSTK+DIS V + K D YF + + +K DQK VD+Q++ I+A+ L+ YL + F+L +G+ PH+LVF Sbjct: 26 KVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-TEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3) HSP 1 Score: 158.303 bits (399), Expect = 4.299e-38 Identity = 108/269 (40.15%), Postives = 140/269 (52.04%), Query Frame = 3 Query: 60 NEMAPKAATGRT--SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 N A K+ G+ SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L + K KP KLRASITPGTVLI+L GR GKRVVFLKQL SGLLL TGP +N VPLRR +Q +VIATSTK+DIS V + K D YF + + +K DQK VD+Q++ I+AV L+ YL + F+L +G+ PH+LVF Sbjct: 31 NVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 157.918 bits (398), Expect = 5.615e-38 Identity = 102/255 (40.00%), Postives = 137/255 (53.73%), Query Frame = 3 Query: 96 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L + K KP KLRASITPGT+LI+L GR GKRV+FLKQL+SGLLL TGP +N VPLRR +Q +VIATSTK+DISGV + + D YF + + +K DQK VD+Q+++ I+AV L+ YL + F+L +G+ PH+LVF Sbjct: 41 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38 Identity = 105/256 (41.02%), Postives = 135/256 (52.73%), Query Frame = 3 Query: 96 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L + K KP +LR+SITPGTVLI+L GR GKRVVFLKQL SGLLL TGP +N VPLRR +Q +VIATSTKVDIS V + K D YF + + +K DQK VD+Q++ I+AV L+ YL ++FSL +GM PH+LVF Sbjct: 54 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3) HSP 1 Score: 155.992 bits (393), Expect = 2.134e-37 Identity = 102/255 (40.00%), Postives = 136/255 (53.33%), Query Frame = 3 Query: 96 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKP-----TKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L + K KP KLRASITPGT+LI+L GR GKRVVFLKQL SGLLL TGP +N VPLRR +Q +VIATSTK+DISGV + + D YF + + +K DQK VD+Q+++ I+AV L+ YL + F+L +G+ PH++VF Sbjct: 44 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEI-TEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287 The following BLAST results are available for this feature:
BLAST of CK939111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939111 ID=CK939111; Name=CK939111; organism=Citrus sinensis; type=EST; length=778bpback to top |