CK939107

Overview
NameCK939107
Unique NameCK939107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2579 contig Csv1_Contig2579:429..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939107 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.275e-22
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVMDVQAAEAEGNXXCGPTCACVNCTCG 263
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G   CGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK939107 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 3
Query:   75 TCGNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVMDVQAAEAEGNXXCGPTCACVNCTCG 263
            TCGNCDC D+SQCVKKG+SY  D +ET+ S+V  V+V   +AAE +G   CG  CAC +C CG
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCG 64          
BLAST of CK939107 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVMDVQAAEAEGNXXCGPTCACVNCTC 260
            MSD CGNCDCAD SQCVKKG+S   D +ETD S++   VVM V AAE+ G   CG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK939107 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVMDVQAAEAEGNXXCGPTCACVNCTC 260
            MS  C NCDC+D SQC KKG S+    +ET+   + T V+MD  AAE  GN  CGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK939107 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVMDVQAAEAEGNXXCGPTCACVNCTCG 263
            MS  C NCDCAD +QCVKKG+SY    +ET+   + TV V D  AAE +G   CG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK939107 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.292e-14
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVMDVQAAEAEGNXXCGPTCACVNCTCG 263
            MSD CGNCDCAD+SQCVKKG+SY    +E + S        +V A E  G   CG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK939107 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.292e-14
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVMDVQAAEAEGNXXCGPTCACVNCTCG 263
            MSD CGNCDCAD+SQCVKKG+SY    +E + S        +V A E  G   CG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK939107 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.164e-11
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVMDVQAAEAEGNXXCGPTCACVNCTCG 263
            MSD CGNCDCAD+SQCVKKG+SY    ++ + S     +  +V   E +G   C   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK939107 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.424e-11
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFLETDLSFVSTVVVMDVQAAEAEGNXXCGPTCACVNCTCG 263
            MSD CG+CDCAD+SQCVKKG+SY    ++ + S     +  +V   E +G   C   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK939107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA7.275e-2266.67Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC7.046e-1757.14Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE7.046e-1763.08Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV1.919e-1453.85Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.919e-1454.55Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ7.292e-1450.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI7.292e-1450.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.164e-1145.45Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI4.424e-1143.94Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004434_C12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939107 ID=CK939107; Name=CK939107; organism=Citrus sinensis; type=EST; length=383bp
AAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTAAGTTCTAAGTT
CTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCTGA
CAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCCTCG
AGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCT
GCTGAGGCTGAAGGTAACTGNNNGTGCGGCCCCACCTGCGCTTGTGTGAA
CTGCACTTGTGGTACTCACTAATAAGCAAACACATGCAGCAAAAAATAAG
AAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAATAATGTAAGGGT
GACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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