CK939086

Overview
NameCK939086
Unique NameCK939086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939086_ssr20 microsatellite CK939086_ssr20:20..34. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939086_ssr79 microsatellite CK939086_ssr79:79..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7775 contig Csv1_Contig7775:128..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939086 vs. ExPASy Swiss-Prot
Match: NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.541e-87
Identity = 162/192 (84.38%), Postives = 179/192 (93.23%), Query Frame = 2
Query:  203 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVS-EPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIDNELD 775
            MA++L MSPQLEQIHGEIRD+FRAL+NGFQ+LDKIKDS RQ+KQLEELT +MRECKRL+KE DRE+KDEEARN PEVNKQLNDEKQSMIKELNSYVALRKTYM++LGNKKVELFDMGAGVS EPTA+ENVQVASSMSNQEL+DAG K MDETDQAI+RS+ VVEQT+EVGTQTA  LKGQTDQMGR+ N LD
Sbjct:    1 MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGVSGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLD 192          
BLAST of CK939086 vs. ExPASy Swiss-Prot
Match: NPS12_ARATH (Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.731e-83
Identity = 153/192 (79.69%), Postives = 177/192 (92.19%), Query Frame = 2
Query:  203 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVS-EPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIDNELD 775
            MA++L MSP LEQIHGEIRD+FRAL+NGFQ+LDKIKDS+RQ+KQLEEL  +MR+CKRL+KE DRE+KD EARN P+VNKQLNDEKQSMIKELNSYVALRKTY+N+LGNKKVELFD GAGVS EPTA+ENVQ+AS+MSNQEL+DAG K MDETDQAI+RS+ VV QT+EVGTQTA+ LKGQTDQMGR+ N+LD
Sbjct:    1 MASELPMSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGVSGEPTAEENVQMASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMGRVVNDLD 192          
BLAST of CK939086 vs. ExPASy Swiss-Prot
Match: NPS11_ARATH (Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.964e-55
Identity = 110/187 (58.82%), Postives = 143/187 (76.47%), Query Frame = 2
Query:  221 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSL--GNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIDNELD 775
            +S +L +I G+I D FRALSNGFQKL+KIKD+NRQ++QLEELT +MR+CK LIK+ DREIK  E+ N    N+ LND +QSM+KELNSYVAL+K Y ++L   NK+V+LFD   G  E   +ENV +AS+MSNQEL+D G   MD+TDQAI+R + +V++TI VGT T+  LK QT+QM R+ NELD
Sbjct:    7 VSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFD---GPGEEHMEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKPQTEQMSRVVNELD 190          
The following BLAST results are available for this feature:
BLAST of CK939086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NPS13_ARATH6.541e-8784.38Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NP... [more]
NPS12_ARATH5.731e-8379.69Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NP... [more]
NPS11_ARATH2.964e-5558.82Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NP... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004434_E12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939086 ID=CK939086; Name=CK939086; organism=Citrus sinensis; type=EST; length=777bp
GGGGGGAATTGANNNCTACATTATTATTATTATTTGTTTTTTATTAAAAG
GAAAGAGGAGTACTGTTCGGTGAGGGTTTTAATTAATTAATTAATTTTTT
AAATTTCCTAAAAACTCCCAGCAACTGATAGGATNNNAGCAATTTGAATG
CCGTGGTGATAATTTAGTTGCCGGAGATTTTGATTGATTTTCCGGCGTAA
TTATGGCGACCGATTTGCAGATGAGCCCTCAGTTGGAGCAGATCCACGGC
GAAATTCGCGATAATTTTCGAGCTCTCTCAAATGGCTTCCAGAAGCTGGA
TAAGATCAAAGATTCCAACCGACAAACTAAGCAGCTGGAAGAACTCACTG
GGAGGATGAGGGAGTGTAAAAGATTAATTAAAGAGATGGATCGTGAAATT
AAAGATGAAGAAGCCCGAAATCCTCCGGAAGTCAATAAGCAACTCAATGA
CGAGAAGCAATCTATGATAAAAGAGTTGAACTCTTATGTTGCATTGAGGA
AAACGTATATGAATAGCCTTGGTAATAAGAAGGTTGAACTCTTTGATATG
GGAGCGGGAGTCAGTGAACCTACAGCTGATGAAAATGTTCAAGTGGCATC
ATCCATGTCAAATCAAGAACTAATTGATGCTGGGAAGAAGACAATGGATG
AGACTGATCAGGCTATTAAACGTTCTCAAATGGTTGTTGAACAAACAATT
GAAGTGGGAACCCAAACTGCCACCACATTAAAGGGTCAAACTGATCAAAT
GGGCCGTATTGATAATGAGCTAGATAC
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