EY665984

Overview
NameEY665984
Unique NameEY665984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665984_ssr840 microsatellite EY665984_ssr840:840..849. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665984_ssr122 microsatellite EY665984_ssr122:122..133. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.812e-21
Identity = 67/176 (38.07%), Postives = 91/176 (51.70%), Query Frame = 1
Query:   19 PAWSPNSSHQKEHHPFPISASVHSNPDVHDSEQVYGRTGEIKHNSVDQTVCEQSKGRPLEQLRHGSPAGNQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 546
            P W+  +S  ++     IS   +   D  D++QV     +   + +           P ++ RH SP   +S +S + +  A  + SG+      N   A    +  VP+N +G              RH SQR+AAL KFRLKRKDRC++KKVRYQSRK LAEQRPRVKGQFVRQ
Sbjct:  456 PIWNSKTSTWQDATTQAISLQQNGPKDT-DTKQVENVEEQTARSHLSANRKHLRIEIPTDEPRHVSPTTGESGSSTVLDS-ARKTLSGSVCDSSSNHMIAPTESSNVVPENPDGL-------------RHLSQREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQ 616          
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.892e-17
Identity = 62/153 (40.52%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  109 SEQVYGRTGEIKHNSVDQTVCEQSKGRPLEQLRHGSPAGNQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKD 567
            S  VY  T E  +N+V+ +V     G       HGS     SSN     G+   S +G        +     SG+G+   NL                   SQR+AALTKFR KRK+RC+ KKVRYQSRK LAEQRPRV+GQFVR+    T D
Sbjct:  587 SSNVYNETIEGNNNTVNYSVNGSVSGSG-----HGSNGPYGSSNGMNAGGMNMGSDNGAGKN---GNGDGSGSGSGSGSGNL-------------ADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAATDD 718          
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.392e-17
Identity = 64/184 (34.78%), Postives = 88/184 (47.83%), Query Frame = 1
Query:   28 SPNSSHQKEHHPFPISASVHSNPDVHDSEQVYGRTGEIKHNSVDQTVCEQSKGRPL--EQLRHGSP-----AGNQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNE 558
            +P  SH+K      +++   S     + E +   +   ++  +  TV  Q +  P+  E  R  +      AG+QS+N G+        SS T    +  S+  + S                            SQR+AAL KFRLKRKDRC+DKKVRYQSRK LAEQRPRVKGQFVR V ++
Sbjct:  315 TPTESHEKLRK---VTSDQGSATTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAASKEVEAGSQSTNEGIAG-----QSSSTEKPKEEESAKQRWS---------------------------RSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSD 463          
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.392e-17
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1
Query:  403 RHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKN 555
            + S QR+AALTKFR+KRKDRCY+KKVRY+SRK LAEQRPR+KGQFVRQV++
Sbjct:  504 QQSLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQS 554          
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  412 SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKDANAD 579
            +QR+AAL KFRLKRK+RC++KKVRY SRK LAEQRP VKGQF+R+ +++ K  + D
Sbjct:  440 AQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK-RDDHKSGSED 494          
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 51/117 (43.59%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  208 HGSPAGNQSSNSGLCNGLANNSSSGTYSRIDR-NSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQRD---AALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 546
            H +  G   SNSG  NG    + S T    +R N   A  +   + P   NG         N +  +  +QR+   AA+ KFR KRK+R + KKVRYQSRK LAEQRPRV+GQFVRQ
Sbjct:  611 HAANYGVNGSNSGSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSG---SGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQ 724          
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 51/117 (43.59%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  208 HGSPAGNQSSNSGLCNGLANNSSSGTYSRIDR-NSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQRD---AALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 546
            H +  G   SNSG  NG    + S T    +R N   A  +   + P   NG         N +  +  +QR+   AA+ KFR KRK+R + KKVRYQSRK LAEQRPRV+GQFVRQ
Sbjct:  611 HAANYGVNGSNSGSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSG---SGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQ 724          
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: PRR1_ORYSJ (Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:  409 SSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 546
            S +R AAL KFRLKRK+RC+DKKVRY +RK LAE RPRV+GQFVRQ
Sbjct:  440 SERRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQ 485          
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: APRR1_ARATH (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  388 NGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKDAN 573
            N +      +R+ AL KFR KR  RC+DKK+RY +RK LAE+RPRVKGQFVR++     D N
Sbjct:  523 NEVRVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLN 584          
BLAST of EY665984 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.701e-11
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1
Query:  418 RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNE 558
            R+AAL KFR KRK R + KKVRYQSRK LAEQRPR++GQFVRQ   E
Sbjct:  712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQE 758          
The following BLAST results are available for this feature:
BLAST of EY665984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PRR95_ORYSJ4.812e-2138.07Two-component response regulator-like PRR95 OS=Ory... [more]
APRR7_ARATH1.892e-1740.52Two-component response regulator-like APRR7 OS=Ara... [more]
APRR9_ARATH9.392e-1734.78Two-component response regulator-like APRR9 OS=Ara... [more]
APRR5_ARATH9.392e-1778.43Two-component response regulator-like APRR5 OS=Ara... [more]
APRR3_ARATH2.165e-1364.29Two-component response regulator-like APRR3 OS=Ara... [more]
PRR37_ORYSJ1.075e-1243.59Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSI1.075e-1243.59Two-component response regulator-like PRR37 OS=Ory... [more]
PRR1_ORYSJ1.075e-1276.09Two-component response regulator-like PRR1 OS=Oryz... [more]
APRR1_ARATH1.188e-1153.23Two-component response regulator-like APRR1 OS=Ara... [more]
PRR73_ORYSJ7.701e-1172.34Two-component response regulator-like PRR73 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665984 ID=EY665984; Name=EY665984; organism=Citrus sinensis; type=EST; length=916bp
CACGCGTCCGGTTTACAACCTGCATGGAGTCCAAACTCCTCCCACCAGAA
AGAACACCATCCTTTTCCTATAAGTGCCTCTGTTCATTCCAACCCTGATG
TTCATGACTCGGAACAAGTTTACGGACGGACGGGTGAAATTAAGCATAAT
TCTGTTGACCAAACTGTGTGTGAGCAGAGCAAAGGGCGGCCTTTGGAACA
GTTGAGACATGGTTCCCCAGCAGGCAATCAGAGCTCCAATAGTGGTCTAT
GCAATGGTCTGGCTAACAACAGTAGTAGTGGAACATACAGTAGAATTGAC
AGAAATTCCTCTTCAGCAAAGGCAAGTGGGACTGGGACAGTTCCACAGAA
CCTCAATGGTTGTACTCTATTCATTCATGACGGATTCAATGGCATTAGTG
CTCGTCACTCCAGCCAAAGGGATGCAGCTTTGACAAAATTCCGGCTCAAG
CGGAAAGATAGATGCTATGACAAAAAGGTTCGATACCAAAGCCGGAAAAG
TTTAGCAGAGCAACGACCCCGGGTCAAAGGACAGTTTGTTCGTCAAGTGA
AAAATGAAACCAAAGATGCTAACGCCGATGGGTGTCCTTAATCTTGAGTA
ATGCACTTATGTGTAATTTAATTTCTCCCTCGTGGAATAAGGGCTCTAGA
ATGGTGGTATTTTCCGAAAAGCAAAGGGGATCATTTGGCAGCTTCCAATT
ATGGAAGGTCTTTTGGAAGTTGGGTGGAACATCACGTAACGTTTCCTTTT
AATCCTGCCCACTCCAAAGAATGAAATTATTTAGGGGGCGCTCCCGAGTG
TTTAATTACGGGGGGTGCTTTTAATAAGTAGGGATCTCCGAGAGAGAGAT
GGAGGACTGAGCGTAGGACGCGAGACGCGAATCTGAGAGAGGCTGGCTCG
CGCCGGGAAGAATTCG
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