CN187990
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 4.223e-68 Identity = 135/218 (61.93%), Postives = 156/218 (71.56%), Query Frame = 2 Query: 32 MAD*HKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 MA+ HKHEE S+ EKI+EKIHGH LKTK++RLFGRE+P+HK+ GGGKPAD+FLWRNKK+S GVLG AT W+ H I+ALAVLFLWS+ASTFI+KSP IPEV+IPE+ VLQLAS LR EINR F +LR+IASGRDLKKFL VIAGLWV+S VGS CNFLTL YI VLL T+PV+YEKYED Sbjct: 1 MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSDDDKNSAS---LKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYED 211
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 7.203e-68 Identity = 132/219 (60.27%), Postives = 151/219 (68.95%), Query Frame = 2 Query: 32 MAD*HKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXX-LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 M + HKHEE S+ EKI EKIHGH K+K++RLFGREKPVHKVLGGGKPAD+FLWRNKK+S GVLG TA WV +CH I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR LLR IASG+D+KKF+ VIAGLWV+SI+GS NFLTLFY VLL T+PV+YEKYED Sbjct: 1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYED 215
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 1.605e-67 Identity = 137/236 (58.05%), Postives = 160/236 (67.80%), Query Frame = 2 Query: 32 MAD*HKHEE------PA-----GESVKEKITEKIH-------GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 MA+ HKH+E PA ES+ +KI+EKIH +K+KV+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV +CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F LREIASGRDLKKFL IAGLWV+SI+G NFLTL YI VLL TVP+ Y+KYED Sbjct: 1 MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYED 236
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.358e-66 Identity = 133/232 (57.33%), Postives = 158/232 (68.10%), Query Frame = 2 Query: 32 MAD*HKHEEPAG-----------ESVKEKITEKIH---GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 MAD HKHEE + ES+ EK++EKIH LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT WV +CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR LREIASGRD+KKFLS IAGLWV+SI+G +FLTL YI VLL TVP+ Y+KYED Sbjct: 1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYED 232
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 3.699e-64 Identity = 122/218 (55.96%), Postives = 153/218 (70.18%), Query Frame = 2 Query: 32 MAD*HKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 MA+ + P ES+ EKI+EKIH H +K K++R+FGREKPVHKVLGGGKPADVFLWR+KK+S VLG ATAIWV +CH I+AL LFLWSNA T INK+ P+IPE+++PEE L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED Sbjct: 1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHED 215
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 4.090e-63 Identity = 122/206 (59.22%), Postives = 146/206 (70.87%), Query Frame = 2 Query: 68 ESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 ES+ EKI +KIH H LK K++RLFGREKPVHKVLGGG PADVFLWR+KK+SA VLG ATAIWV VCH LI ALA LFL SNA F+NK+PP+IPE++I EE L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED Sbjct: 13 ESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHED 215
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2) HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49 Identity = 88/171 (51.46%), Postives = 122/171 (71.35%), Query Frame = 2 Query: 173 LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 + ++R+FGRE+P+H VLGGGKPADV LWR+KK++ G+L T IW+ +C I+ L + FLWSNA +NKSP + ++YIPE+P+LQ ASA+ FE+N AF LR IA RD+K F+ + GLW+VS++G+W +FL+L YI FVL+HTVP++YEKYED Sbjct: 47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYED 214
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 5.554e-44 Identity = 84/165 (50.91%), Postives = 114/165 (69.09%), Query Frame = 2 Query: 191 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 RLF R+KP+H VLGGGK ADV LWRNKKISA VL GATAIWV VC+ L++ + F+WSNAS F+N+S R+P + +P++ ++ A+ E+NR L+++A +LK+FL + GLWV ++VGS CNFLT+ YI FV HT+PV+YE+YED Sbjct: 44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYED 208
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31 Identity = 63/168 (37.50%), Postives = 95/168 (56.55%), Query Frame = 2 Query: 182 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 K +LF R++ +H + GGGK AD+ LWR KI+A ++ G + +W +CH + ++ F+WS AS F+N P IPEV + E QLA + N+ L ++A GRD F L++VSI+G++ NF+ L +I FV + T+PV+YE YED Sbjct: 19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYED 186
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26 Identity = 55/165 (33.33%), Postives = 95/165 (57.58%), Query Frame = 2 Query: 191 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 +LF R++ +H++LGGG ADV LWR K +S G++ A W+ + L++ L++LFLWS +++ +N+ P +PE I E + + LR +N+ + +IA RD + + V L+++S++GS +F TL + +++ TVP YE+YED Sbjct: 7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYED 171 The following BLAST results are available for this feature:
BLAST of CN187990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN187990 ID=CN187990; Name=CN187990; organism=Citrus sinensis; type=EST; length=686bpback to top |