CN187989

Overview
NameCN187989
Unique NameCN187989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12816 contig Csv1_Contig12816:471..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.857e-49
Identity = 99/137 (72.26%), Postives = 113/137 (82.48%), Query Frame = -3
Query:  221 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 628
            FLWSNA+ FI+K PP+IPEV+IPEEP+LQLA  LR EINR    LREIASGRD+KKFLS IAGLWV+SI+G   +FLTL YI  VLL TVP+ Y+KYED+VDS+ EKA AE+KKQYAV DAKV SKIPR  LKDKKK
Sbjct:  134 FLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDKKK 270          
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.562e-47
Identity = 98/137 (71.53%), Postives = 109/137 (79.56%), Query Frame = -3
Query:  221 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 628
            FLWSNA+ FINK PP+IPEV+IPEEP+LQLA  LR EINR F  LREIASGRDLKKFL  IAGLWV+SI+G   NFLTL YI  VLL TVP+ Y+KYED+VD   EKA  E+KKQYAV D KVLSKIP   LK+KKK
Sbjct:  138 FLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKK 274          
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.026e-46
Identity = 94/140 (67.14%), Postives = 109/140 (77.86%), Query Frame = -3
Query:  221 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVL----SKIPRSLKDKKK 628
            FLWSNA TFI+K  P IPEV+IPE+P+LQL   LR EINR   LLR IASG+D+KKF+ VIAGLWV+SI+GS  NFLTLFY   VLL T+PV+YEKYED+VD++ EKA  EIKKQYAV D KVL    SKIPR   +KKK
Sbjct:  117 FLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256          
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.573e-46
Identity = 93/127 (73.23%), Postives = 104/127 (81.89%), Query Frame = -3
Query:  248 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVLSKI 628
            FLWS+ASTFI+K P  IPEV+IPE+ VLQLA  LR EINR F +LR+IASGRDLKKFL VIAGLWV+S VGS CNFLTL YI  VLL T+PV+YEKYED+VD F EKA  EIKKQY  FD KVLSK+
Sbjct:  113 FLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239          
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.255e-45
Identity = 88/137 (64.23%), Postives = 109/137 (79.56%), Query Frame = -3
Query:  221 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVLSKIP-RSLKDKKK 628
            FLWSNA T INK  P+IPE+++PEE  L +A +LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD   EKA  E++KQY VFD KVLSKIP  SLK K K
Sbjct:  117 FLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKAK 253          
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.809e-42
Identity = 84/135 (62.22%), Postives = 104/135 (77.04%), Query Frame = -3
Query:  227 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVLSKIP-RSLKDK 628
            FL SNA  F+NK PP+IPE++I EE  L +  ALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD   EK   E+KK Y VFD KVLSK+P  SLK K
Sbjct:  117 FLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAK 251          
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.265e-37
Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = -3
Query:  245 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVLSKIP 628
            FLWSNA   +NK P  + ++YIPE+P+LQ A A+ FE+N AF  LR IA  RD+K F+  + GLW+VS++G+W +FL+L YI FVL+HTVP++YEKYED +D   EKA  E+KK Y VF+AK LSKIP
Sbjct:  119 FLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243          
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.164e-26
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = -3
Query:  221 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKK 628
            F+WSNAS F+N+   R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  + GLWV ++VGS CNFLT+ YI FV  HT+PV+YE+YED VD F +    +    Y   D   LS+IP      KK
Sbjct:  110 FVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPSGKFGLKK 245          
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.684e-23
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = -3
Query:  224 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVLSKIPR-SLKDKK 628
            F+WS AS F+N   P IPEV + E    QLA +     N+    L ++A GRD   F      L++VSI+G++ NF+ L +I FV + T+PV+YE YED VD+   K   ++KK Y   D  VLSKIPR ++K+KK
Sbjct:   88 FIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNKK 223          
BLAST of CN187989 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.934e-19
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = -3
Query:  248 FLWSNASTFINKFPPRIPEVYIPEEPVLQLAFALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFFEKAWAEIKKQYAVFDAKVLSKI 628
            FLW+ ++   N+  P++P + I EE V  +A A+R  IN    + REI  GR+ K+   V   LW VS VG++ NFLT+ Y+  VL   +P +YE+Y+D +D         I+ QY   D ++L KI
Sbjct:   63 FLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189          
The following BLAST results are available for this feature:
BLAST of CN187989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLB_ARATH4.857e-4972.26Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH1.562e-4771.53Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH5.026e-4667.14Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH8.573e-4673.23Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH4.255e-4564.23Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH9.809e-4262.22Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH3.265e-3757.03Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH1.164e-2641.91Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH2.684e-2343.38Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH8.934e-1937.80Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187989 ID=CN187989; Name=CN187989; organism=Citrus sinensis; type=EST; length=630bp
TTTTTTTTTTTTTTTTTCTGCAAATAGCTACGACATATGTCCCTTTAACA
AGTACAAAATATCCATATTGTGAACCCAACCACCTTTAAAACAACAAAGG
AATAAAACAGGGTTCAAGCCAACACTGGATAACAGTTTCATAACACCTAG
ATAAAATACTTTCTACCAAATGTGTGTCAAAACCTAGCAAAGACCGCAAA
TTTATACCACCATTCTAAGCCTTCTTCTTGTCCTTCAATGACCTTGGTAT
CTTACTTAAAACCTTGGCATCAAAGACTGCATACTGCTTCTTGATCTCAG
CCCATGCCTTCTCAAAAAATGAATCCACCCGATCCTCATACTTCTCATAT
ATCACAGGCACAGTGTGAAGCAGTACAAAAACTATGTAGAACAAGGTCAA
GAAATTGCACCAGCTCCCCACAATCGACACAACCCACAAGCCAGCAATCA
CCGAGAGAAACTTCTTCAGATCTCTTCCAGATGCTATTTCCCTCAAAAGA
GGGAAGGCCCTATTGATCTCAAACCTAAGTGCAAAGGCCAACTGTAAAAC
TGGTTCCTCAGGGATATATACTTCTGGAATGCGTGGTGGAAACTTGTTAA
TGAAGGTGGAAGCATTAGACCACAAGAAAA
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