CK939004

Overview
NameCK939004
Unique NameCK939004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939004 vs. ExPASy Swiss-Prot
Match: FBW4_ARATH (F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 1.032e-82
Identity = 154/252 (61.11%), Postives = 184/252 (73.02%), Query Frame = 3 
Query:  129 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSM-------RLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCQMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK---------------------IVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQL 800
            +IESL+ DI+C+IFS L  FDLV C+ VC SWNA+I R KLLQ    K+H   + S SS         + +E+ AMKHH+ AL  GRI+I++W+AHS  V QC+MK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+A+SL+DFDFDESK                     IVGL+GTRI IWRRNG RS+FPSR GTF KGLCMRY DPEAVVGCEDGTARVFDMYS+ CSQIIR    P+T LSLS++QL
Sbjct:   22 SIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRLKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHRVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLAWEYFDSVVVVVVEIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKTCSQIIRTQGGPITCLSLSDNQL 273
The following BLAST results are available for this feature:
BLAST of CK939004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBW4_ARATH1.032e-8261.11F-box/WD-40 repeat-containing protein At3g52030 OS... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004435_E04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939004 ID=CK939004; Name=CK939004; organism=Citrus sinensis; type=EST; length=801bp
GGGGGACCACCTTCGTCTCTCGTGCCACACTAAGTTGGACAACCGCCAAC
GGCAGAGAGACGATGGAGCGCACAAGGTCCAGTAGGCGGTCACCGCCGCC
GAAGAAGAGAAGCTCGAAACCTCGGGCGACAATTGAATCCCTCAACGGCG
ACATAATCTGTATGATCTTCTCATCCCTCGGGTTCTTCGATCTCGTTAGA
TGTTCTGCCGTTTGCAAGTCCTGGAACGCCATTATAAACAGATGTAAGTT
ACTACAACTACTCTATTGCAAGCTACATGGCTTCTCGAATACGTCGGGTT
CTTCGATGAGGTTGCATTTGGAGGAGCTAGCTATGAAGCACCATCGATTT
GCTTTAGAAGAAGGTCGAATTGATATTGATCAATGGAAAGCTCATTCAGT
TGGGGTTGATCAGTGCCAAATGAAGAGGGGTTTGATTCTAACTGGTGTAG
GTGATAAGGTTATGCGGCTCTGGTCACTAGAAGGATACAAATGTGTGGAA
GAGTATTCACTTCCAAATGCAGCTTCACTGGTTGATTTTGATTTTGATGA
GAGCAAGATTGTTGGTTTGATTGGCACACGTATATGCATATGGAGGCGCA
ACGGTTTAAGGAGTGTATTTCCCTCACGTGAAGGCACATTCATGAAGGGT
TTATGTATGCGATACTTTGATCCAGAGGCTGTAGTTGGATGTGAGGATGG
GACTGCCCGTGTGTTTGACATGTATAGTAGAAAATGCTCTCAAATCATTA
GGATGCATTGTGCACCAGTAACATCTTTATCTTTGAGTGAGGATCAGTTA
A
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