CK938986

Overview
NameCK938986
Unique NameCK938986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length355
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_CITSI (DNA-directed RNA polymerase subunit beta OS=Citrus sinensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.350e-51
Identity = 98/102 (96.08%), Postives = 98/102 (96.08%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGNAGMSTIPGLN IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPLLKERDAVYESFTYSSELYVS GLIWKSRGDMQEQTIFIG
Sbjct:    1 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSAGLIWKSRGDMQEQTIFIG 102
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_TOBAC (DNA-directed RNA polymerase subunit beta OS=Nicotiana tabacum GN=rpoB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SOLTU (DNA-directed RNA polymerase subunit beta OS=Solanum tuberosum GN=rpoB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SOLLC (DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum GN=rpoB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SOLBU (DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum GN=rpoB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_NICSY (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris GN=rpoB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_ATRBE (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna GN=rpoB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_NICTO (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.484e-46
Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQT FIG
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTFFIG 102
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_EUCGG (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus GN=rpoB PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.238e-46
Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN GMSTIPG N IQFEGFCRFI QGLTEEL KFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQT+FIG
Sbjct:    1 MLGDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELIKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTLFIG 102
[Close]
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_COFAR (DNA-directed RNA polymerase subunit beta OS=Coffea arabica GN=rpoB PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.610e-45
Identity = 88/102 (86.27%), Postives = 91/102 (89.22%), Query Frame = -1 
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            MLGDGN GM+TIPG N IQFEGFCRFI QGL EELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYE  TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MLGDGNEGMATIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYELLTYSSELYVSAGLIWKTGRDMQEQTIFIG 102
The following BLAST results are available for this feature:
BLAST of CK938986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RPOB_CITSI3.350e-5196.08DNA-directed RNA polymerase subunit beta OS=Citrus... [more]
RPOB_TOBAC8.539e-4788.24DNA-directed RNA polymerase subunit beta OS=Nicoti... [more]
RPOB_SOLTU8.539e-4788.24DNA-directed RNA polymerase subunit beta OS=Solanu... [more]
RPOB_SOLLC8.539e-4788.24DNA-directed RNA polymerase subunit beta OS=Solanu... [more]
RPOB_SOLBU8.539e-4788.24DNA-directed RNA polymerase subunit beta OS=Solanu... [more]
RPOB_NICSY8.539e-4788.24DNA-directed RNA polymerase subunit beta OS=Nicoti... [more]
RPOB_ATRBE8.539e-4788.24DNA-directed RNA polymerase subunit beta OS=Atropa... [more]
RPOB_NICTO2.484e-4687.25DNA-directed RNA polymerase subunit beta OS=Nicoti... [more]
RPOB_EUCGG4.238e-4687.25DNA-directed RNA polymerase subunit beta OS=Eucaly... [more]
RPOB_COFAR1.610e-4586.27DNA-directed RNA polymerase subunit beta OS=Coffea... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004435_G06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938986 ID=CK938986; Name=CK938986; organism=Citrus sinensis; type=EST; length=355bp
TTCCAATAAAAATAGTTTGTTCCTGCATGTCCCCTCGGCTTTTCCAAATT
AATCCTGGGGATACATATAATTCAGAAGAATACGTGAATGATTCATATAC
AGCATCTCTTTCTTTTAGCAAGGGTTCTACCAATTGATATGTTTCCACAA
ATAATTGAAATTCAGTTTCTTGATCTGTATCTTCAATTTTTGGAAACTTA
TAAAGCTCTTCTGTTAGGCCCTGATGAATGAACCTACAAAATCCTTCAAA
TTGTATCGGATTTAACCCAGGTATTGTAGACATTCCTGCATTTCCATCTC
CGAGCATTTTGAATTTCCCATTTATCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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