CX675580

Overview
NameCX675580
Unique NameCX675580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: AFB2_ARATH (Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.306e-79
Identity = 149/203 (73.40%), Postives = 164/203 (80.79%), Query Frame = 1
Query:    1 LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDD---QMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 600
            LYFCQQMTNAAL+TVAKN  NF RFRLCIL+  KPD VT QPLDEGFGAIV++CK           TDQVFLYIGMYA QLEMLSIAFAG++DKGMLYVLNGCKK++KLEIRDSPFG+TALL DV KYETMRSLWMSSCEVTL GC+ LA+K P LNVEIINE+D     E   + RQKV K+YLYRT+VG R DAP FVW L
Sbjct:  373 LYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDEGFGAIVKACKSLRRLSLSGLLTDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSCEVTLSGCKRLAEKAPWLNVEIINENDNNRMEENGHEGRQKVDKLYLYRTVVGTRMDAPPFVWIL 575          
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: AFB3_ARATH (Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.641e-78
Identity = 146/200 (73.00%), Postives = 164/200 (82.00%), Query Frame = 1
Query:    1 LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDD---QMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFV 591
            LYFC+QMTNAALI VAKN  NF RFRLCIL+  KPD +T Q LDEGFGAIVQ+CK           TDQVFLYIGMYAEQLEMLSIAFAG++DKGMLYVLNGCKK+RKLEIRDSPFGN ALL DVG+YETMRSLWMSSCEVTLGGC+ LA+  PRLNVEIINE++     +   D+R+KV K+YLYRT+VG RKDAP +V
Sbjct:  375 LYFCKQMTNAALIAVAKNCPNFIRFRLCILEPHKPDHITFQSLDEGFGAIVQACKGLRRLSVSGLLTDQVFLYIGMYAEQLEMLSIAFAGDTDKGMLYVLNGCKKMRKLEIRDSPFGNAALLADVGRYETMRSLWMSSCEVTLGGCKRLAQNSPRLNVEIINENENNGMEQNEEDEREKVDKLYLYRTVVGTRKDAPPYV 574          
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: TIR1B_ORYSJ (Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.295e-72
Identity = 137/200 (68.50%), Postives = 156/200 (78.00%), Query Frame = 1
Query:    1 LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDD---QMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFV 591
            LYFC QMTNAAL+TVAKN  NFTRFRLCIL+  KPD VT QPLDEGFGAIV+ CK           TD+VF+YIG YA+QLEMLSIAFAG+SDKGM++V+NGCK LRKLEIRDSPFG+ ALL +  +YETMRSLWMSSC VTL GCQ LA KMP LNVE+INE D   +ME +  D  KV K+Y+YRT  G R DAP+FV
Sbjct:  373 LYFCHQMTNAALVTVAKNCPNFTRFRLCILEPGKPDVVTSQPLDEGFGAIVRECKGLQRLSISGLLTDKVFMYIGKYAKQLEMLSIAFAGDSDKGMMHVMNGCKNLRKLEIRDSPFGDAALLGNFARYETMRSLWMSSCNVTLKGCQVLASKMPMLNVEVINERDGSNEMEENHGDLPKVEKLYVYRTTAGARDDAPNFV 572          
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: TIRC_ORYSJ (Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.952e-67
Identity = 125/201 (62.19%), Postives = 153/201 (76.12%), Query Frame = 1
Query:    1 LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQME--FSLDDRQKVGKMYLYRTLVGPRKDAPDFVWT 597
            LYFCQ+MTN+ALITVAKN   FT FRLC+LD    D VT QPLDEG+GAIVQSCK           TD VFLYIGMYAE+LEMLS+AFAG++D GM YVLNGCK L+KLEIRDSPFG++ALL  + +YE MRSLW+SSC VTLGGC++LA  M  LN+E++N    +    + +D +KV K+Y+YRT+ GPR DAP+F+ T
Sbjct:  367 LYFCQRMTNSALITVAKNCPRFTSFRLCVLDPGSADAVTGQPLDEGYGAIVQSCKGLRRLCLSGLLTDTVFLYIGMYAERLEMLSVAFAGDTDDGMTYVLNGCKNLKKLEIRDSPFGDSALLAGMHQYEAMRSLWLSSCNVTLGGCKSLAASMANLNIEVMNRAASINEADNANDAKKVKKLYIYRTVAGPRGDAPEFIST 567          
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: TIR1_ARATH (Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 1.823e-61
Identity = 114/200 (57.00%), Postives = 148/200 (74.00%), Query Frame = 1
Query:    1 LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 600
            LYFC+QMTNAALIT+A+N  N TRFRLCI++ + PD +T++PLD GFGAIV+ CK           TD+VF YIG YA+++EMLS+AFAG+SD GM +VL+GC  LRKLEIRD PFG+ ALL +  K ETMRSLWMSSC V+ G C+ L +KMP+LNVE+I+E    + S  +   V ++++YRT+ GPR D P FVW +
Sbjct:  378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD-SRPESCPVERVFIYRTVAGPRFDMPGFVWNM 576          
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: TIR1A_ORYSJ (Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.217e-58
Identity = 113/192 (58.85%), Postives = 140/192 (72.92%), Query Frame = 1
Query:    1 LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQM--EFSLDDRQKVGKMYLYRTLVGPR 570
            LYFC++MTN ALIT+AKN  NFT FRLCIL+   PD +T +PLD GF AIV+SC+           TD VF  IG +A++LEMLSIAFAGNSD G+ Y+L+GCK L+KLEIRD PFG+  LL +  K ETMRSLWMSSC +TLG C+ LA+KMPRL+VEI+N+  +     SL D   V K+Y+YRT+ GPR
Sbjct:  389 LYFCRRMTNEALITIAKNRPNFTCFRLCILEPHTPDYITREPLDAGFSAIVESCRGLRRLSISGLLTDLVFKSIGAHADRLEMLSIAFAGNSDLGLHYILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCLLTLGACRQLARKMPRLSVEIMNDPGRSCPLDSLPDETPVEKLYVYRTIAGPR 580          
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: GRH1_ARATH (GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.200e-54
Identity = 102/200 (51.00%), Postives = 138/200 (69.00%), Query Frame = 1
Query:    1 LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 600
            LYFC Q TNAAL T+A+   N   FRLC+++   PD  T +PLD+GF AI + C+           +D+ F YIG +A+++ MLSIAFAG+SD  + ++L+GC+ L+KLEIRD PFG+TALL    K ETMRSLWMSSC V+ G C+ L++KMPRLNVE+I  D+    S  +   V ++Y+YRT+ GPR D P+FVWT+
Sbjct:  374 LYFCVQFTNAALFTIARKRPNLKCFRLCVIEPFAPDYKTNEPLDKGFKAIAEGCRDLRRLSVSGLLSDKAFKYIGKHAKKVRMLSIAFAGDSDLMLHHLLSGCESLKKLEIRDCPFGDTALLEHAAKLETMRSLWMSSCFVSFGACKLLSQKMPRLNVEVI--DEHPPESRPESSPVERIYIYRTVAGPRMDTPEFVWTI 571          
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: TIR1L_ARATH (Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.309e-51
Identity = 100/200 (50.00%), Postives = 136/200 (68.00%), Query Frame = 1
Query:    1 LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 600
            LYFCQ+MTNAA+I +++N    T FRLCI+ R +PD VT +P+DEGFGAIV++CK           TDQ F Y+G Y + +  LS+AFAG+SD  + +VL GC +L+KLEIRDSPFG+ AL + + +Y  MR +WMS+C ++ G C+ +A+ MP L VE+I  DD      D+R  V  +Y+YR+L GPR DAP FV  L
Sbjct:  424 LYFCQRMTNAAVIAMSENCPELTVFRLCIMGRHRPDHVTGKPMDEGFGAIVKNCKKLTRLAVSGLLTDQAFRYMGEYGKLVRTLSVAFAGDSDMALRHVLEGCPRLQKLEIRDSPFGDVALRSGMHRYYNMRFVWMSACSLSKGCCKDIARAMPNLVVEVIGSDDDD----DNRDYVETLYMYRSLDGPRNDAPKFVTIL 619          
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: FBX14_ARATH (F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.469e-50
Identity = 96/200 (48.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query:    1 LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 600
            LYFCQ MTN A+  +++N    T FRLCI+ R +PD VT +P+D+GFGAIV++CK           TD+ F YIG Y + +  LS+AFAGNSDK + YVL GC KL+KLEIRDSPFG+  L + + +Y  MR +W+SSC ++ GGC+ ++  +P + VE+   D   +        V  +YLYR+L GPRKDAP FV  L
Sbjct:  424 LYFCQNMTNGAVTAMSENCPQLTVFRLCIMGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAVSGLLTDEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSCLISRGGCRGVSHALPNVVVEVFGADGDDDEDTVTGDYVETLYLYRSLDGPRKDAPKFVTIL 623          
BLAST of CX675580 vs. ExPASy Swiss-Prot
Match: COI1_ARATH (Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 55/205 (26.83%), Postives = 92/205 (44.88%), Query Frame = 1
Query:    7 FCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXX---TDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINE----DDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 600
            +   +TN +L ++     N   FRL +LDRE  + +T  PLD G  +++  CK              TD    YIG Y+  +  + + + G SD+G++    GC  L+KLE+R   F   A+   V K  ++R LW+     ++ G   +    P  N+E+I      +   +  + + +    +  Y +L G R D P  V  L
Sbjct:  386 YVSDITNESLESIGTYLKNLCDFRLVLLDRE--ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588          
The following BLAST results are available for this feature:
BLAST of CX675580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AFB2_ARATH3.306e-7973.40Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis tha... [more]
AFB3_ARATH1.641e-7873.00Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis tha... [more]
TIR1B_ORYSJ2.295e-7268.50Transport inhibitor response 1-like protein Os04g0... [more]
TIRC_ORYSJ4.952e-6762.19Transport inhibitor response 1-like protein Os11g0... [more]
TIR1_ARATH1.823e-6157.00Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidop... [more]
TIR1A_ORYSJ3.217e-5858.85Transport inhibitor response 1-like protein Os05g0... [more]
GRH1_ARATH8.200e-5451.00GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH... [more]
TIR1L_ARATH1.309e-5150.00Transport inhibitor response 1-like protein OS=Ara... [more]
FBX14_ARATH2.469e-5048.00F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX... [more]
COI1_ARATH1.786e-1626.83Coronatine-insensitive protein 1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63C04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63C04-E7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675580 ID=CX675580; Name=CX675580; organism=Citrus sinensis; type=EST; length=615bp
CTTTACTTCTGCCAGCAAATGACTAATGCCGCCCTAATAACTGTAGCCAA
GAATAATTCAAATTTCACTCGCTTCAGATTGTGCATCCTTGACCGTGAAA
AACCTGACCCTGTCACCATGCAGCCTTTGGATGAAGGTTTTGGGGCAATT
GTACAATCATGCAAGCGTCTAAGGCGATTGTCACTCTCTGGCCTTTTAAC
TGACCAGGTTTTCCTTTACATTGGAATGTATGCTGAGCAGCTGGAAATGC
TTTCTATTGCATTTGCTGGGAATAGCGACAAGGGAATGCTGTATGTATTG
AACGGGTGCAAGAAGCTCCGCAAGCTGGAAATCAGGGACAGCCCCTTCGG
TAACACAGCACTTCTGACGGACGTGGGAAAGTATGAGACAATGCGATCCC
TTTGGATGTCGTCCTGCGAAGTTACCCTTGGAGGCTGCCAGACACTTGCG
AAGAAGATGCCTAGGCTCAATGTGGAGATCATAAATGAAGATGATCAGAT
GGAGTTTAGCCTGGATGATAGACAAAAAGTAGGGAAGATGTATTTGTACC
GCACCCTGGTCGGGCCAAGGAAAGATGCGCCAGATTTTGTGTGGACTCTC
TAAGTTTATCTGGGG
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