CK938881

Overview
NameCK938881
Unique NameCK938881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4306 contig Csv1_Contig4306:324..1213. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.259e-44
Identity = 92/104 (88.46%), Postives = 92/104 (88.46%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_LOTJA (30S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.121e-43
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KG+IHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR VADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_SOYBN (30S ribosomal protein S11, chloroplastic OS=Glycine max GN=rps11 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.912e-43
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_GOSHI (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum GN=rps11 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.497e-43
Identity = 90/104 (86.54%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.497e-43
Identity = 90/104 (86.54%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_CARPA (30S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.497e-43
Identity = 90/104 (86.54%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_ACOCL (30S ribosomal protein S11, chloroplastic OS=Acorus calamus GN=rps11 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.262e-43
Identity = 88/104 (84.62%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KG+IHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_PHAVU (30S ribosomal protein S11, chloroplastic OS=Phaseolus vulgaris GN=rps11 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.260e-43
Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KG+IHVQASFNNTIVT+TDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRAE+MIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_PHAAN (30S ribosomal protein S11, chloroplastic OS=Phaseolus angularis GN=rps11 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.260e-43
Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KG+IHVQASFNNTIVT+TDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRAE+MIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of CK938881 vs. ExPASy Swiss-Prot
Match: RR11_POPTR (30S ribosomal protein S11, chloroplastic OS=Populus trichocarpa GN=rps11 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.267e-43
Identity = 89/104 (85.58%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  321 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 632
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGACGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
The following BLAST results are available for this feature:
BLAST of CK938881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_CITSI2.259e-4488.4630S ribosomal protein S11, chloroplastic OS=Citrus... [more]
RR11_LOTJA1.121e-4385.5830S ribosomal protein S11, chloroplastic OS=Lotus ... [more]
RR11_SOYBN1.912e-4385.5830S ribosomal protein S11, chloroplastic OS=Glycin... [more]
RR11_GOSHI2.497e-4386.5430S ribosomal protein S11, chloroplastic OS=Gossyp... [more]
RR11_GOSBA2.497e-4386.5430S ribosomal protein S11, chloroplastic OS=Gossyp... [more]
RR11_CARPA2.497e-4386.5430S ribosomal protein S11, chloroplastic OS=Carica... [more]
RR11_ACOCL3.262e-4384.6230S ribosomal protein S11, chloroplastic OS=Acorus... [more]
RR11_PHAVU4.260e-4382.6930S ribosomal protein S11, chloroplastic OS=Phaseo... [more]
RR11_PHAAN4.260e-4382.6930S ribosomal protein S11, chloroplastic OS=Phaseo... [more]
RR11_POPTR7.267e-4385.5830S ribosomal protein S11, chloroplastic OS=Populu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_B12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938881 ID=CK938881; Name=CK938881; organism=Citrus sinensis; type=EST; length=890bp
GGGGGAATAACAATTATGAAAATAAGGGCTTCAGTTCGTAAAATTTGTGA
AAAATGTCGACTGATCCGCAGGAGGGGACGGATTATAGTAATTTGTTCCA
ACCCGAGACATAAACAAAGACAAGGATAATCTTTCGAAAAGTTTAGAAAG
TAACCGATGAACAAATCAACATAAAAGATCGGTTTTGACATGAAATGGAT
ATATCCATATATCTCTGACTTATATTTATGAAATGATCAAATATGGCAAA
ATCTCCACCACGAAGTGGTTCACGTAGGCCGGGACGGATCGGTTCACGTA
AAAGTGGACGTCGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTC
AACAACACCATTGTGACTGTTACAGATGTCCGGGGTCGGGTAATTTCTTG
GTCCTCGGCCGGTACTTGTGGATTCAGGGGTACAAGAAGAGGTACGCCTT
TTGCTGCTCAAACCGCAGCAGGAAATGCTATTCGAGCAGTAGCGGATCAA
GGTATGCAACGAGCAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGAGA
TGCGGCATTACGAGCTATTCGTAGAAGCGGTATCCTTTTAAATTTCGTAC
GGGATGTAACCCCTATGCCACACAATGGTTGCAGACCCCCTAAAAAAAGA
CGGGTGTAGAAATAAACATTGAAGAGATTTCAAGAGAAATAAATGACTCA
ATGATCTGACAAATAATATTACTATGGTTCGAGAGAAAGTAAAAGTATCT
ACTCGGACACTACAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCG
TCTTTATTATGGGCGCTTTATTTTGTCTCCACTTATGAAAGGTCAAGCCG
ACACAATAGGCATTGCGATGCTGAGAGTTTTGCTTGNNNN
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