CK938880

Overview
NameCK938880
Unique NameCK938880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.095e-34
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            MAS DVE+RCFVGGLAWAT D +L  AFS YG++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+I VNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.431e-34
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            A+VE+RCFVGGLAWAT D SL +AFS +GDI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNI VNEAQ
Sbjct:    2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.440e-34
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            MAS DVE+RCFVGGLAWAT D +L  AF+ YGD+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+I VNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            MAS DVE+RCFVGGLAWAT + SL  AFS +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+I VNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.298e-31
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            MA+ADVE+RCFVGGLAWAT++ SL  AF++YG+IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNI VN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.253e-30
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            ADVE+RCFVGGL WAT D SL  AFS YGD+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNI VNEAQ
Sbjct:    2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.763e-30
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            ++VE+RCFVGGLAWAT D  L   FS +GD+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR I VNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.221e-30
Identity = 59/82 (71.95%), Postives = 72/82 (87.80%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            ++VE+RCFVGGLAWAT D+ L   FS +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR I VNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.061e-29
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            MA+ADVE+RCFVGGLAWAT + +L +AF+ +G +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNI VN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK938880 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.278e-21
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  140 SSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNIAVNEAQ 331
            +SLH AFS YG++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNI VNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of CK938880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GRP1_SINAL1.095e-3481.18Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA1.431e-3484.15Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP7_ARATH2.440e-3478.82Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL1.211e-3378.82Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE3.298e-3174.12Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU1.253e-3075.61Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH4.763e-3073.17Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA6.221e-3071.95Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SORBI1.061e-2969.41Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI5.278e-2176.56Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004437_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938880 ID=CK938880; Name=CK938880; organism=Citrus sinensis; type=EST; length=700bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAGCAGTCAACGAGGCCCAGTCCCGTGGGAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATA
CGGAGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAG
GAGTTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATG
TGTCGTTTTGATCGGTTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top