CN187908

Overview
NameCN187908
Unique NameCN187908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187908_ssr187 microsatellite CN187908_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
CN187908_ssr685 microsatellite CN187908_ssr685:685..696. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2677 contig Csv1_Contig2677:91..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187908 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSJ (Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:  127 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 507
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
[Close]
BLAST of CN187908 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSI (Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:  127 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 507
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
The following BLAST results are available for this feature:
BLAST of CN187908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRS1_ORYSJ4.360e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
SRS1_ORYSI4.360e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187908 ID=CN187908; Name=CN187908; organism=Citrus sinensis; type=EST; length=733bp
AGGGAGTGCATAGCTATTCAGATTCTTTTAGCAAACTTCTGCTTGCTGCA
CCAAGCCACCAACTCAACTCAGATTTTTCTTTCAGAGGGACTCATTTGAT
TGGAAAAAAGAAGAAAGATGGGGTACTGGAAATCCAAGGTCCTCCCAAGG
ATCAAGAAAGTTTTCGAGAAAAACGGAACCAAGAAAGCTGCTGCTGCTGA
GGCTTGCAAGTCCTTTGATGATTCAAAGGAAGAAATCAATAAAGAGTTTG
AAGAGAAGAAGCCTGAGCTCCAACCTAAAGTGGTCGAAATCTATGAAGCT
TCTTCAGCTGAAATCAAGACCCTGGTCAAGGATCGCAAGGAGGATGGACT
TAAGAAGCACTCCACTGCTGTGCACAAGTTACTTGAAGAACTCGTTAAAA
TCGAGTTTCCAGGATCAAAAGCAGTAAGTGAAGCATCGTCAAAGTTTGGG
GCAGCCTCTGTTCCGGGGCCAGTTTTCTTCATATTTGAGAAGGTCTCAAC
GTTTATTGTTACTGAAGAAAAAGCAGCAGAGCCAGCAACCGCCGCAGCAG
GAGAAGAAACAAAACCAGAACAAGAGACAACAAGTAGTAGTACCGCCGCA
GTCACAGAGAAGGACGACGTAGTTGTTGAGGAAGAGAAGAAAGAAGAGGC
CCCCGCCGGCCCTGAGAAAACTGAGCCGGCAGAAGCCGCCGCCGCCCCAG
CCCCAACTGAGCCTCTTCCTGCCGCCGCCAAGG
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