CN187906

Overview
NameCN187906
Unique NameCN187906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.859e-50
Identity = 106/150 (70.67%), Postives = 113/150 (75.33%), Query Frame = -1
Query:  295 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 744
            VWTKSAFEKLD IYG FDK SEKK GYVLPRSKMVNADLARIINSDEVQSVV PI+   KRA                 PYAKTARRMSLLAEA+RV           KPI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  259 VWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.135e-48
Identity = 100/150 (66.67%), Postives = 113/150 (75.33%), Query Frame = -1
Query:  295 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 744
            +WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDE+QSVV PIK + KRA                 PYAKTA+RMSLLAEAQRV           K +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  257 IWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.302e-48
Identity = 102/150 (68.00%), Postives = 111/150 (74.00%), Query Frame = -1
Query:  295 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 744
            +WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDEVQSVV PIK   KRA                 PYAKTA+RMSLLAEA RV           K +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  258 IWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  562 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKR 744
            +WTKSAFE+LD  +G F K S +KKGY LPR  + NAD+ R++NSDE+Q+ VR  K  VKR
Sbjct:  250 IWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = -1
Query:  454 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 744
            +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                  PYAKTARR ++L + + +
Sbjct:  250 IWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = -1
Query:  454 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 744
            +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                  PYAKTARR ++L + + +
Sbjct:  255 IWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = -1
Query:  460 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 744
            +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = -1
Query:  460 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 744
            +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = -1
Query:  370 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKA 744
            +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+               + K EAAA   A K+
Sbjct:  251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN----------HKLRVKKLEAAAAALAAKS 365          
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = -1
Query:  460 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 744
            +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
The following BLAST results are available for this feature:
BLAST of CN187906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RL4_PRUAR7.859e-5070.6760S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH1.135e-4866.6760S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH3.302e-4868.0060S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_DICDI3.119e-1457.3860S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4B_XENLA1.003e-1239.1860S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4A_XENLA1.003e-1239.1860S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_PONAB1.712e-1238.9560S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_HUMAN1.712e-1238.9560S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT2.236e-1235.2060S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MOUSE2.920e-1238.9560S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187906 ID=CN187906; Name=CN187906; organism=Citrus sinensis; type=EST; length=744bp
AGTAGAATTCTAATTTTTAAGTATAAATAGTACCATTAAGCCTATAAATC
CACCTCCTAAAACATATAACTCCAATTCTAACTTTAAAGAAAGTTCTTTC
ACCTTGCCTATAAAGACAAAAAAGCTGGGAGGAAAAACAGACGTCGAAAC
ATTGACCATTCAGCTTATCTTCCTTCCAAACATTCTCATCCATGACTCAA
AACAGCAAAAGATACTAAAATTCAACAGCAAATCCACAAAGATTAACAAG
ATATTGTCTCAAAAATCAAAATTTAAAAACCAACAATCAGATTACTGTGA
GACACCAAGCCACTTCGAGAAGTTCTCGAACTCGGTATAATCACTGTCTG
AGATCATAGTCTGGTACCATGCCTTGCCGGCAGACTTGATTGCAGCTGCC
TCCTCCTTAGTGATGGGCTTCCTCTTCTTGTCGAGCTTCTCCTTCTTAGC
TTTAACCCGTTGTGCCTCAGCCAAAAGTGACATCCGCCGAGCAGTCTTAG
CATATGGGTTCAACCTCAACAGAGTATTCAAGTTCTTGAGAGGATTCTTC
TTCATCGGAGCCCTCTTAACCTCCGTCTTAATCGGCCTGACAACAGACTG
CACCTCATCCGAGTTAATAATCCTAGCCAAATCAGCGTTGACCATCTTGG
AACGAGGCAGCACATAACCCTTCTTCTTCTCGGAACCCTTATCAAACTTA
CCATAAATCTCATCAAGCTTCTCAAAAGCCGATTTAGTCCAAAC
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