CN187906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 7.859e-50 Identity = 106/150 (70.67%), Postives = 113/150 (75.33%), Query Frame = -1 Query: 295 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 744 VWTKSAFEKLD IYG FDK SEKK GYVLPRSKMVNADLARIINSDEVQSVV PI+ KRA PYAKTARRMSLLAEA+RV KPI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ Sbjct: 259 VWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.135e-48 Identity = 100/150 (66.67%), Postives = 113/150 (75.33%), Query Frame = -1 Query: 295 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 744 +WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDE+QSVV PIK + KRA PYAKTA+RMSLLAEAQRV K +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ Sbjct: 257 IWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 3.302e-48 Identity = 102/150 (68.00%), Postives = 111/150 (74.00%), Query Frame = -1 Query: 295 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 744 +WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDEVQSVV PIK KRA PYAKTA+RMSLLAEA RV K +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ Sbjct: 258 IWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14 Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = -1 Query: 562 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKR 744 +WTKSAFE+LD +G F K S +KKGY LPR + NAD+ R++NSDE+Q+ VR K VKR Sbjct: 250 IWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12 Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = -1 Query: 454 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 744 +WT+SAF KLD++YG + K ++ K Y LP KM N DL RI+ S E+Q +R +VKR PYAKTARR ++L + + + Sbjct: 250 IWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12 Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = -1 Query: 454 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 744 +WT+SAF KLD++YG + K ++ K Y LP KM N DL RI+ S E+Q +R +VKR PYAKTARR ++L + + + Sbjct: 255 IWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12 Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = -1 Query: 460 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 744 +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ Sbjct: 251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5) HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12 Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = -1 Query: 460 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 744 +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ Sbjct: 251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12 Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = -1 Query: 370 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKA 744 +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ + K EAAA A K+ Sbjct: 251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN----------HKLRVKKLEAAAAALAAKS 365
BLAST of CN187906 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12 Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = -1 Query: 460 VWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 744 +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ Sbjct: 251 IWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345 The following BLAST results are available for this feature:
BLAST of CN187906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187906 ID=CN187906; Name=CN187906; organism=Citrus sinensis; type=EST; length=744bpback to top |